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septin6 septin 6 [ Esox lucius (northern pike) ]

Gene ID: 105025449, updated on 18-Jun-2024

Summary

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Gene symbol
septin6
Gene description
septin 6
See related
Ensembl:ENSELUG00000020499
Gene type
protein coding
RefSeq status
MODEL
Organism
Esox lucius
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Esociformes; Esocidae; Esox
Also known as
sept6
Orthologs
human zebrafish all
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Genomic context

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See septin6 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
12
Annotation release Status Assembly Chr Location
104 current fEsoLuc1.pri (GCF_011004845.1) 4 NC_047572.1 (8066150..8089576, complement)
103 previous assembly Eluc_v4 (GCF_004634155.1) Linkage Group LG04 NC_025971.4 (26769889..26793349)

Chromosome 4 - NC_047572.1Genomic Context describing neighboring genes Neighboring gene ubiquitin-conjugating enzyme E2A (RAD6 homolog) Neighboring gene uncharacterized LOC109615720 Neighboring gene NFKB repressing factor Neighboring gene uncharacterized LOC109615719 Neighboring gene PTTG1 regulator of sister chromatid separation, securin Neighboring gene sosondowah ankyrin repeat domain family d

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables GTP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables GTPase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables molecular adaptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cilium assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cytoskeleton-dependent cytokinesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell division site IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in microtubule cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of septin complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in septin ring IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
septin-6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Esox lucius Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fEsoLuc1.pri Primary Assembly

Genomic

  1. NC_047572.1 Reference fEsoLuc1.pri Primary Assembly

    Range
    8066150..8089576 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010896141.3 → XP_010894443.1  septin-6 isoform X2

    UniProtKB/TrEMBL
    A0A6Q2XLU7
    Related
    ENSELUP00000021388.3, ENSELUT00000032058.3
    Conserved Domains (2) summary
    cd01850
    Location:40 → 307
    CDC_Septin; CDC/Septin GTPase family
    COG5019
    Location:21 → 373
    CDC3; Septin family protein [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton]

  2. XM_010896133.3 → XP_010894435.1  septin-6 isoform X1

    UniProtKB/TrEMBL
    A0A6Q2XLU7
    Conserved Domains (2) summary
    cd01850
    Location:40 → 307
    CDC_Septin; CDC/Septin GTPase family
    COG5019
    Location:21 → 373
    CDC3; Septin family protein [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton]

  3. XM_010896149.3 → XP_010894451.1  septin-6 isoform X3

    UniProtKB/TrEMBL
    A0A6Q2XLU7
    Conserved Domains (2) summary
    cd01850
    Location:40 → 307
    CDC_Septin; CDC/Septin GTPase family
    COG5019
    Location:21 → 373
    CDC3; Septin family protein [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton]

RNA

  1. XR_829133.3 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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