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pelo pelota mRNA surveillance and ribosome rescue factor [ Esox lucius (northern pike) ]

Gene ID: 105024388, updated on 18-Jun-2024

Summary

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Gene symbol
pelo
Gene description
pelota mRNA surveillance and ribosome rescue factor
See related
Ensembl:ENSELUG00000023229
Gene type
protein coding
RefSeq status
MODEL
Organism
Esox lucius
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Esociformes; Esocidae; Esox
Orthologs
human zebrafish all
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Genomic context

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See pelo in Genome Data Viewer
Location:
chromosome: 5
Exon count:
13
Annotation release Status Assembly Chr Location
104 current fEsoLuc1.pri (GCF_011004845.1) 5 NC_047573.1 (32928623..32937790, complement)
103 previous assembly Eluc_v4 (GCF_004634155.1) Linkage Group LG05 NC_025972.4 (33134008..33143175, complement)

Chromosome 5 - NC_047573.1Genomic Context describing neighboring genes Neighboring gene calymmin Neighboring gene progestin and adipoQ receptor family member 4 Neighboring gene protein phosphatase 1, catalytic subunit, alpha isozyme b Neighboring gene ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1, like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in RNA surveillance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nonfunctional rRNA decay IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nuclear-transcribed mRNA catabolic process, no-go decay IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nuclear-transcribed mRNA catabolic process, non-stop decay IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in ribosome disassembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein pelota homolog
Names
pelota homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Esox lucius Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fEsoLuc1.pri Primary Assembly

Genomic

  1. NC_047573.1 Reference fEsoLuc1.pri Primary Assembly

    Range
    32928623..32937790 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010894318.3 → XP_010892620.1  protein pelota homolog

    UniProtKB/TrEMBL
    A0A3P9AM46, A0A3P9AM50
    Related
    ENSELUP00000042138.2, ENSELUT00000035930.3
    Conserved Domains (4) summary
    COG1537
    Location:1 → 370
    PelA; Stalled ribosome rescue protein Dom34, pelota family [Translation, ribosomal structure and biogenesis]
    pfam03463
    Location:1 → 128
    eRF1_1; eRF1 domain 1
    pfam03464
    Location:136 → 268
    eRF1_2; eRF1 domain 2
    pfam03465
    Location:271 → 370
    eRF1_3; eRF1 domain 3
Nucleotide Protein
Heading Accession and Version

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