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zgc:171927 uncharacterized LOC105024135 [ Esox lucius (northern pike) ]

Gene ID: 105024135, updated on 18-Jun-2024

Summary

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Gene symbol
zgc:171927
Gene description
uncharacterized LOC105024135
See related
Ensembl:ENSELUG00000041606
Gene type
protein coding
RefSeq status
MODEL
Organism
Esox lucius
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Esociformes; Esocidae; Esox
Orthologs
zebrafish all
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Genomic context

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See zgc:171927 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
7
Annotation release Status Assembly Chr Location
104 current fEsoLuc1.pri (GCF_011004845.1) 1 NC_047569.1 (30382468..30385635, complement)
103 previous assembly Eluc_v4 (GCF_004634155.1) Linkage Group LG01 NC_025968.4 (12846040..12849230)

Chromosome 1 - NC_047569.1Genomic Context describing neighboring genes Neighboring gene deltaC Neighboring gene translocase of inner mitochondrial membrane 50 homolog (S. cerevisiae) Neighboring gene uncharacterized LOC105024134 Neighboring gene SNARE_SNAP25N and SNARE_SNAP23C domain-containing protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables GTP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables GTPase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein secretion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of exocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vesicle docking involved in exocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ras-related protein Rab-1A
Names
Rab1_Ypt1 domain-containing protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Esox lucius Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fEsoLuc1.pri Primary Assembly

Genomic

  1. NC_047569.1 Reference fEsoLuc1.pri Primary Assembly

    Range
    30382468..30385635 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010893857.5 → XP_010892159.1  ras-related protein Rab-1A

    UniProtKB/TrEMBL
    A0A3P8Y3R1
    Related
    ENSELUP00000081709.1, ENSELUT00000094034.1
    Conserved Domains (2) summary
    smart00175
    Location:31 → 194
    RAB; Rab subfamily of small GTPases
    cd01869
    Location:29 → 194
    Rab1_Ypt1; Rab GTPase family 1 includes the yeast homolog Ypt1
Nucleotide Protein
Heading Accession and Version

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