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LOC105023634 polypeptide N-acetylgalactosaminyltransferase 15 [ Esox lucius (northern pike) ]

Gene ID: 105023634, updated on 18-Jun-2024

Summary

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Gene symbol
LOC105023634
Gene description
polypeptide N-acetylgalactosaminyltransferase 15
See related
Ensembl:ENSELUG00000006025
Gene type
protein coding
RefSeq status
MODEL
Organism
Esox lucius
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Esociformes; Esocidae; Esox
Also known as
galnt15
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Genomic context

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See LOC105023634 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
10
Annotation release Status Assembly Chr Location
104 current fEsoLuc1.pri (GCF_011004845.1) 10 NC_047578.1 (12325368..12332189)
103 previous assembly Eluc_v4 (GCF_004634155.1) Linkage Group LG10 NC_025977.4 (12405497..12412167)

Chromosome 10 - NC_047578.1Genomic Context describing neighboring genes Neighboring gene insulin-like growth factor 2 mRNA binding protein 3 Neighboring gene glycoprotein (transmembrane) nmb Neighboring gene gastrula zinc finger protein XlCGF57.1-like Neighboring gene oxidoreductase NAD-binding domain containing 1 Neighboring gene raftlin, lipid raft linker 1a

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polypeptide N-acetylgalactosaminyltransferase 15

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Esox lucius Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fEsoLuc1.pri Primary Assembly

Genomic

  1. NC_047578.1 Reference fEsoLuc1.pri Primary Assembly

    Range
    12325368..12332189
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010892988.3 → XP_010891290.2  polypeptide N-acetylgalactosaminyltransferase 15 isoform X1

    UniProtKB/TrEMBL
    A0A3P8ZK98
    Related
    ENSELUP00000029166.3, ENSELUT00000011531.3
    Conserved Domains (2) summary
    cd02510
    Location:190 → 487
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    pfam00652
    Location:500 → 636
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain

  2. XM_020050203.2 → XP_019905762.2  polypeptide N-acetylgalactosaminyltransferase 15 isoform X2

    UniProtKB/TrEMBL
    A0A3P8ZK98
    Conserved Domains (2) summary
    pfam00652
    Location:473 → 558
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain
    cl11394
    Location:190 → 456
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

  3. XM_020050204.2 → XP_019905763.2  polypeptide N-acetylgalactosaminyltransferase 15 isoform X3

    Conserved Domains (1) summary
    cd02510
    Location:190 → 487
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
Nucleotide Protein
Heading Accession and Version

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