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septin7b septin 7b [ Esox lucius (northern pike) ]

Gene ID: 105021882, updated on 18-Jun-2024

Summary

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Gene symbol
septin7b
Gene description
septin 7b
See related
Ensembl:ENSELUG00000013781
Gene type
protein coding
RefSeq status
MODEL
Organism
Esox lucius
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Esociformes; Esocidae; Esox
Also known as
sept7b
Orthologs
zebrafish all
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Genomic context

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See septin7b in Genome Data Viewer
Location:
chromosome: 20
Exon count:
17
Annotation release Status Assembly Chr Location
104 current fEsoLuc1.pri (GCF_011004845.1) 20 NC_047588.1 (13005974..13021201, complement)
103 previous assembly Eluc_v4 (GCF_004634155.1) Linkage Group LG20 NC_025987.4 (33462192..33477482)

Chromosome 20 - NC_047588.1Genomic Context describing neighboring genes Neighboring gene collagen, type XXVIII, alpha 1b Neighboring gene uncharacterized si:dkey-256h2.1 Neighboring gene uncharacterized LOC105021881 Neighboring gene NIMA-related kinase 10 Neighboring gene retinoic acid receptor beta

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables GTP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables GTPase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables molecular adaptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cilium assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cytoskeleton-dependent cytokinesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell division site IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in microtubule cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of septin complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in septin ring IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
septin 7b

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Esox lucius Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fEsoLuc1.pri Primary Assembly

Genomic

  1. NC_047588.1 Reference fEsoLuc1.pri Primary Assembly

    Range
    13005974..13021201 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010889869.5 → XP_010888171.1  septin 7b isoform X4

    UniProtKB/TrEMBL
    A0A3P8YAS5
    Conserved Domains (3) summary
    cd01850
    Location:27 → 297
    CDC_Septin; CDC/Septin GTPase family
    COG5019
    Location:9 → 398
    CDC3; Septin family protein [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton]
    cl19842
    Location:311 → 424
    DUF2213; Uncharacterized protein conserved in bacteria (DUF2213)

  2. XM_020041217.3 → XP_019896776.1  septin 7b isoform X2

    UniProtKB/TrEMBL
    A0A3P8YAS5
    Conserved Domains (2) summary
    cd01850
    Location:36 → 306
    CDC_Septin; CDC/Septin GTPase family
    TIGR02794
    Location:363 → 431
    tolA_full; TolA protein

  3. XM_020041218.3 → XP_019896777.1  septin 7b isoform X3

    UniProtKB/TrEMBL
    A0A6Q2XWQ0
    Related
    ENSELUP00000083529.1, ENSELUT00000106140.1
    Conserved Domains (2) summary
    cd01850
    Location:37 → 307
    CDC_Septin; CDC/Septin GTPase family
    cl25548
    Location:312 → 427
    DUF4670; Domain of unknown function (DUF4670)

  4. XM_020041216.3 → XP_019896775.1  septin 7b isoform X1

    UniProtKB/TrEMBL
    A0A3P8YAS5, A0A6Q2XJG1
    Related
    ENSELUP00000013682.3, ENSELUT00000038618.3
    Conserved Domains (2) summary
    cd01850
    Location:37 → 307
    CDC_Septin; CDC/Septin GTPase family
    cl25548
    Location:336 → 434
    DUF4670; Domain of unknown function (DUF4670)
Nucleotide Protein
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