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rab5ab RAB5A, member RAS oncogene family, b [ Esox lucius (northern pike) ]

Gene ID: 105021874, updated on 18-Jun-2024

Summary

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Gene symbol
rab5ab
Gene description
RAB5A, member RAS oncogene family, b
See related
Ensembl:ENSELUG00000027339
Gene type
protein coding
RefSeq status
MODEL
Organism
Esox lucius
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Esociformes; Esocidae; Esox
Orthologs
zebrafish all
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Genomic context

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See rab5ab in Genome Data Viewer
Location:
chromosome: 20
Exon count:
7
Annotation release Status Assembly Chr Location
104 current fEsoLuc1.pri (GCF_011004845.1) 20 NC_047588.1 (13246519..13252565, complement)
103 previous assembly Eluc_v4 (GCF_004634155.1) Linkage Group LG20 NC_025987.4 (33247276..33253340)

Chromosome 20 - NC_047588.1Genomic Context describing neighboring genes Neighboring gene ubiquitin-conjugating enzyme E2E 2 Neighboring gene zinc finger protein 385D Neighboring gene EF-hand domain family, member B Neighboring gene SATB homeobox 1b

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome and linkage map of the northern pike (Esox lucius): conserved synteny revealed between the salmonid sister group and the Neoteleostei. Rondeau EB, et al. PLoS One, 2014. PMID 25069045, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables GTP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables GTPase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
RAB5A, member RAS oncogene family, b
Names
ras-related protein Rab-5A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Esox lucius Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fEsoLuc1.pri Primary Assembly

Genomic

  1. NC_047588.1 Reference fEsoLuc1.pri Primary Assembly

    Range
    13246519..13252565 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010889860.5 → XP_010888162.1  RAB5A, member RAS oncogene family, b

    UniProtKB/TrEMBL
    A0A6Q2YWT0, A0A6Q2Z428
    Related
    ENSELUP00000072512.2, ENSELUT00000056905.2
    Conserved Domains (2) summary
    cd01860
    Location:21 → 183
    Rab5_related; Rab-related GTPase family includes Rab5 and Rab22; regulates early endosome fusion
    pfam00071
    Location:23 → 184
    Ras; Ras family

RNA

  1. XR_828862.5 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases