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srl sarcalumenin [ Esox lucius (northern pike) ]

Gene ID: 105021645, updated on 18-Jun-2024

Summary

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Gene symbol
srl
Gene description
sarcalumenin
See related
Ensembl:ENSELUG00000015616
Gene type
protein coding
RefSeq status
MODEL
Organism
Esox lucius
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Esociformes; Esocidae; Esox
Orthologs
human zebrafish all
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Genomic context

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See srl in Genome Data Viewer
Location:
chromosome: 11
Exon count:
9
Annotation release Status Assembly Chr Location
104 current fEsoLuc1.pri (GCF_011004845.1) 11 NC_047579.1 (22469466..22494450)
103 previous assembly Eluc_v4 (GCF_004634155.1) Linkage Group LG11 NC_025978.4 (32131677..32156682, complement)

Chromosome 11 - NC_047579.1Genomic Context describing neighboring genes Neighboring gene GLIS family zinc finger 2b Neighboring gene transcription factor AP-4 (activating enhancer binding protein 4) Neighboring gene adenylate cyclase type 9 Neighboring gene CREB binding protein b

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables GTP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sarcalumenin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Esox lucius Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fEsoLuc1.pri Primary Assembly

Genomic

  1. NC_047579.1 Reference fEsoLuc1.pri Primary Assembly

    Range
    22469466..22494450
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010889440.3 → XP_010887742.1  sarcalumenin isoform X1

    UniProtKB/TrEMBL
    A0A3P8YGI9, A0A6Q2WU25
    Related
    ENSELUP00000015689.1, ENSELUT00000039452.3
    Conserved Domains (2) summary
    cd09913
    Location:108 → 349
    EHD; Eps15 homology domain (EHD), C-terminal domain
    pfam16880
    Location:61 → 87
    EHD_N; N-terminal EH-domain containing protein

  2. XM_010889441.3 → XP_010887743.1  sarcalumenin isoform X2

    UniProtKB/TrEMBL
    A0A3P9A6I3
    Related
    ENSELUP00000036331.1, ENSELUT00000024888.3
    Conserved Domains (2) summary
    cd09913
    Location:96 → 337
    EHD; Eps15 homology domain (EHD), C-terminal domain
    pfam16880
    Location:61 → 91
    EHD_N; N-terminal EH-domain containing protein

  3. XM_020050603.2 → XP_019906162.1  sarcalumenin isoform X3

    UniProtKB/TrEMBL
    A0A6Q2WU25
    Conserved Domains (1) summary
    cd09913
    Location:37 → 278
    EHD; Eps15 homology domain (EHD), C-terminal domain

  4. XM_020050604.2 → XP_019906163.1  sarcalumenin isoform X3

    UniProtKB/TrEMBL
    A0A6Q2WU25
    Conserved Domains (1) summary
    cd09913
    Location:37 → 278
    EHD; Eps15 homology domain (EHD), C-terminal domain
Nucleotide Protein
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