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xpo1a exportin 1 (CRM1 homolog, yeast) a [ Esox lucius (northern pike) ]

Gene ID: 105021538, updated on 18-Jun-2024

Summary

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Gene symbol
xpo1a
Gene description
exportin 1 (CRM1 homolog, yeast) a
See related
Ensembl:ENSELUG00000012707
Gene type
protein coding
RefSeq status
MODEL
Organism
Esox lucius
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Esociformes; Esocidae; Esox
Also known as
xpo1
Orthologs
zebrafish all
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Genomic context

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See xpo1a in Genome Data Viewer
Location:
chromosome: 9
Exon count:
25
Annotation release Status Assembly Chr Location
104 current fEsoLuc1.pri (GCF_011004845.1) 9 NC_047577.1 (19108102..19121643, complement)
103 previous assembly Eluc_v4 (GCF_004634155.1) Linkage Group LG09 NC_025976.4 (19327181..19340607, complement)

Chromosome 9 - NC_047577.1Genomic Context describing neighboring genes Neighboring gene protocadherin Fat 4 Neighboring gene ubiquitin specific peptidase 34 Neighboring gene small nucleolar RNA SNORA5 Neighboring gene small nucleolar RNA SNORA5 Neighboring gene FAM161 centrosomal protein A Neighboring gene chaperonin containing TCP1, subunit 4 (delta)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome and linkage map of the northern pike (Esox lucius): conserved synteny revealed between the salmonid sister group and the Neoteleostei. Rondeau EB, et al. PLoS One, 2014. PMID 25069045, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables nuclear export signal receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables small GTPase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein export from nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in ribosomal large subunit export from nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in ribosomal small subunit export from nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
exportin-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Esox lucius Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fEsoLuc1.pri Primary Assembly

Genomic

  1. NC_047577.1 Reference fEsoLuc1.pri Primary Assembly

    Range
    19108102..19121643 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010889293.5 → XP_010887595.1  exportin-1

    UniProtKB/TrEMBL
    A0A6Q2Z3F5, A0A6Q2ZKY4
    Related
    ENSELUP00000072383.1, ENSELUT00000074040.2
    Conserved Domains (4) summary
    smart00913
    Location:46 → 112
    IBN_N; Importin-beta N-terminal domain
    smart01102
    Location:709 → 1026
    CRM1_C; CRM1 C terminal
    COG5101
    Location:15 → 1043
    CRM1; Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
    pfam08389
    Location:129 → 268
    Xpo1; Exportin 1-like protein
Nucleotide Protein
Heading Accession and Version

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