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chst11 carbohydrate (chondroitin 4) sulfotransferase 11 [ Esox lucius (northern pike) ]

Gene ID: 105020201, updated on 18-Jun-2024

Summary

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Gene symbol
chst11
Gene description
carbohydrate (chondroitin 4) sulfotransferase 11
See related
Ensembl:ENSELUG00000005547
Gene type
protein coding
RefSeq status
MODEL
Organism
Esox lucius
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Esociformes; Esocidae; Esox
Orthologs
human zebrafish all
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Genomic context

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See chst11 in Genome Data Viewer
Location:
chromosome: 23
Exon count:
10
Annotation release Status Assembly Chr Location
104 current fEsoLuc1.pri (GCF_011004845.1) 23 NC_047591.1 (11045496..11090308, complement)
103 previous assembly Eluc_v4 (GCF_004634155.1) Linkage Group LG23 NC_025990.4 (14322807..14367815)

Chromosome 23 - NC_047591.1Genomic Context describing neighboring genes Neighboring gene enoyl CoA hydratase domain containing 3 Neighboring gene solute carrier family 41 member 2b Neighboring gene nuclear transcription factor Y subunit beta Neighboring gene histidine ammonia-lyase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome and linkage map of the northern pike (Esox lucius): conserved synteny revealed between the salmonid sister group and the Neoteleostei. Rondeau EB, et al. PLoS One, 2014. PMID 25069045, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteoglycan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
carbohydrate sulfotransferase 11

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Esox lucius Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fEsoLuc1.pri Primary Assembly

Genomic

  1. NC_047591.1 Reference fEsoLuc1.pri Primary Assembly

    Range
    11045496..11090308 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010887016.5 → XP_010885318.1  carbohydrate sulfotransferase 11 isoform X1

    UniProtKB/TrEMBL
    A0A3P8ZIY7, A0A6Q2XIG1
    Related
    ENSELUP00000028804.1, ENSELUT00000012448.3
    Conserved Domains (1) summary
    pfam03567
    Location:113 → 343
    Sulfotransfer_2; Sulfotransferase family

  2. XM_020043033.3 → XP_019898592.1  carbohydrate sulfotransferase 11 isoform X3

    UniProtKB/TrEMBL
    A0A6Q2XIG1
    Conserved Domains (1) summary
    pfam03567
    Location:73 → 303
    Sulfotransfer_2; Sulfotransferase family

  3. XM_010887023.5 → XP_010885325.1  carbohydrate sulfotransferase 11 isoform X3

    See identical proteins and their annotated locations for XP_010885325.1

    UniProtKB/TrEMBL
    A0A6Q2XIG1
    Conserved Domains (1) summary
    pfam03567
    Location:73 → 303
    Sulfotransfer_2; Sulfotransferase family

  4. XM_010887018.5 → XP_010885320.1  carbohydrate sulfotransferase 11 isoform X3

    See identical proteins and their annotated locations for XP_010885320.1

    UniProtKB/TrEMBL
    A0A6Q2XIG1
    Conserved Domains (1) summary
    pfam03567
    Location:73 → 303
    Sulfotransfer_2; Sulfotransferase family

  5. XM_010887022.5 → XP_010885324.1  carbohydrate sulfotransferase 11 isoform X3

    See identical proteins and their annotated locations for XP_010885324.1

    UniProtKB/TrEMBL
    A0A6Q2XIG1
    Conserved Domains (1) summary
    pfam03567
    Location:73 → 303
    Sulfotransfer_2; Sulfotransferase family

  6. XM_010887017.5 → XP_010885319.1  carbohydrate sulfotransferase 11 isoform X2

    UniProtKB/TrEMBL
    A0A3P8XL28, A0A6Q2XIG1
    Related
    ENSELUP00000084476.1, ENSELUT00000093444.1
    Conserved Domains (1) summary
    pfam03567
    Location:85 → 315
    Sulfotransfer_2; Sulfotransferase family

  7. XM_010887021.5 → XP_010885323.1  carbohydrate sulfotransferase 11 isoform X3

    See identical proteins and their annotated locations for XP_010885323.1

    UniProtKB/TrEMBL
    A0A6Q2XIG1
    Conserved Domains (1) summary
    pfam03567
    Location:73 → 303
    Sulfotransfer_2; Sulfotransferase family

  8. XM_010887024.5 → XP_010885326.1  carbohydrate sulfotransferase 11 isoform X4

    UniProtKB/TrEMBL
    A0A6Q2XIG1
    Conserved Domains (1) summary
    pfam03567
    Location:63 → 293
    Sulfotransfer_2; Sulfotransferase family
Nucleotide Protein
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