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LOC105020024 E3 ubiquitin-protein ligase Midline-1 [ Esox lucius (northern pike) ]

Gene ID: 105020024, updated on 18-Jun-2024

Summary

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Gene symbol
LOC105020024
Gene description
E3 ubiquitin-protein ligase Midline-1
See related
Ensembl:ENSELUG00000020888
Gene type
protein coding
RefSeq status
MODEL
Organism
Esox lucius
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Esociformes; Esocidae; Esox
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Genomic context

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See LOC105020024 in Genome Data Viewer
Location:
chromosome: 22
Exon count:
12
Annotation release Status Assembly Chr Location
104 current fEsoLuc1.pri (GCF_011004845.1) 22 NC_047590.1 (4859218..4894096)
103 previous assembly Eluc_v4 (GCF_004634155.1) Linkage Group LG22 NC_025989.4 (4875944..4910900)

Chromosome 22 - NC_047590.1Genomic Context describing neighboring genes Neighboring gene MSL complex subunit 3 Neighboring gene rho GTPase-activating protein 6 Neighboring gene uncharacterized LOC105020025 Neighboring gene SLIT and NTRK-like protein 5

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
E3 ubiquitin-protein ligase Midline-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Esox lucius Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fEsoLuc1.pri Primary Assembly

Genomic

  1. NC_047590.1 Reference fEsoLuc1.pri Primary Assembly

    Range
    4859218..4894096
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020042525.2 → XP_019898084.2  E3 ubiquitin-protein ligase Midline-1

    UniProtKB/TrEMBL
    A0A3P8YZ68
    Related
    ENSELUP00000021864.2, ENSELUT00000032742.3
    Conserved Domains (7) summary
    smart00502
    Location:238 → 362
    BBC; B-Box C-terminal domain
    cd00063
    Location:400 → 499
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd19822
    Location:187 → 232
    Bbox2_MID1_C-I; B-box-type 2 zinc finger found in midline-1 (MID1) and similar proteins
    cd19836
    Location:135 → 182
    Bbox1_MID1_C-I; B-box-type 1 zinc finger found in midline-1 (MID1) and similar proteins
    pfam18568
    Location:341 → 392
    COS; TRIM C-terminal subgroup One Signature domain
    cl02614
    Location:503 → 679
    SPRY; SPRY domain
    cl17238
    Location:8 → 61
    RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

  2. XM_010886667.4 → XP_010884969.2  E3 ubiquitin-protein ligase Midline-1

    UniProtKB/TrEMBL
    A0A3P8YZ68
    Related
    ENSELUP00000021868.3, ENSELUT00000032663.3
    Conserved Domains (7) summary
    smart00502
    Location:238 → 362
    BBC; B-Box C-terminal domain
    cd00063
    Location:400 → 499
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd19822
    Location:187 → 232
    Bbox2_MID1_C-I; B-box-type 2 zinc finger found in midline-1 (MID1) and similar proteins
    cd19836
    Location:135 → 182
    Bbox1_MID1_C-I; B-box-type 1 zinc finger found in midline-1 (MID1) and similar proteins
    pfam18568
    Location:341 → 392
    COS; TRIM C-terminal subgroup One Signature domain
    cl02614
    Location:503 → 679
    SPRY; SPRY domain
    cl17238
    Location:8 → 61
    RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

  3. XM_010886669.4 → XP_010884971.2  E3 ubiquitin-protein ligase Midline-1

    UniProtKB/TrEMBL
    A0A3P8YZ68
    Conserved Domains (7) summary
    smart00502
    Location:238 → 362
    BBC; B-Box C-terminal domain
    cd00063
    Location:400 → 499
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd19822
    Location:187 → 232
    Bbox2_MID1_C-I; B-box-type 2 zinc finger found in midline-1 (MID1) and similar proteins
    cd19836
    Location:135 → 182
    Bbox1_MID1_C-I; B-box-type 1 zinc finger found in midline-1 (MID1) and similar proteins
    pfam18568
    Location:341 → 392
    COS; TRIM C-terminal subgroup One Signature domain
    cl02614
    Location:503 → 679
    SPRY; SPRY domain
    cl17238
    Location:8 → 61
    RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
Nucleotide Protein
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