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LOC105019766 Sin3A-associated protein, 18kDa [ Esox lucius (northern pike) ]

Gene ID: 105019766, updated on 18-Jun-2024

Summary

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Gene symbol
LOC105019766
Gene description
Sin3A-associated protein, 18kDa
See related
Ensembl:ENSELUG00000003652
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Esox lucius
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Esociformes; Esocidae; Esox
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Genomic context

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See LOC105019766 in Genome Data Viewer
Location:
chromosome: 22
Exon count:
4
Annotation release Status Assembly Chr Location
104 current fEsoLuc1.pri (GCF_011004845.1) 22 NC_047590.1 (13138570..13140540)
103 previous assembly Eluc_v4 (GCF_004634155.1) Linkage Group LG22 NC_025989.4 (13274355..13276325)

Chromosome 22 - NC_047590.1Genomic Context describing neighboring genes Neighboring gene gap junction alpha-3 protein-like Neighboring gene gap junction beta-2 protein-like Neighboring gene fibroblast growth factor 14 Neighboring gene SWI/SNF complex subunit SWI3D

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Salmo salar and Esox lucius full-length cDNA sequences reveal changes in evolutionary pressures on a post-tetraploidization genome. Leong JS, et al. BMC Genomics, 2010 Apr 30. PMID 20433749, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables transcription corepressor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription factor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
Sin3A-associated protein, 18kDa
Names
Histone deacetylase complex subunit SAP18

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001303923.1 → NP_001290852.1  Sin3A-associated protein, 18kDa

    See identical proteins and their annotated locations for NP_001290852.1

    Status: PROVISIONAL

    Source sequence(s)
    BT080032
    UniProtKB/TrEMBL
    A0A3P8XGQ9, C1BZK3
    Related
    ENSELUP00000002282.1, ENSELUT00000015980.3
    Conserved Domains (1) summary
    pfam06487
    Location:24 → 137
    SAP18; Sin3 associated polypeptide p18 (SAP18)

RefSeqs of Annotated Genomes: Esox lucius Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fEsoLuc1.pri Primary Assembly

Genomic

  1. NC_047590.1 Reference fEsoLuc1.pri Primary Assembly

    Range
    13138570..13140540
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases