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aicda activation-induced cytidine deaminase [ Esox lucius (northern pike) ]

Gene ID: 105019036, updated on 19-Jun-2024

Summary

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Gene symbol
aicda
Gene description
activation-induced cytidine deaminase
See related
Ensembl:ENSELUG00000016293
Gene type
protein coding
RefSeq status
MODEL
Organism
Esox lucius
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Esociformes; Esocidae; Esox
Orthologs
human zebrafish all
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Genomic context

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See aicda in Genome Data Viewer
Location:
chromosome: 20
Exon count:
5
Annotation release Status Assembly Chr Location
104 current fEsoLuc1.pri (GCF_011004845.1) 20 NC_047588.1 (27311196..27313167)
103 previous assembly Eluc_v4 (GCF_004634155.1) Linkage Group LG20 NC_025987.4 (19152152..19154120, complement)

Chromosome 20 - NC_047588.1Genomic Context describing neighboring genes Neighboring gene zinc finger protein 628 Neighboring gene N-acetyltransferase 14 (GCN5-related, putative) Neighboring gene adaptin ear-binding coat-associated protein 1 Neighboring gene microfibril associated protein 5

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cytidine deaminase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cytidine to uridine editing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
single-stranded DNA cytosine deaminase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Esox lucius Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fEsoLuc1.pri Primary Assembly

Genomic

  1. NC_047588.1 Reference fEsoLuc1.pri Primary Assembly

    Range
    27311196..27313167
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010884926.3 → XP_010883228.1  single-stranded DNA cytosine deaminase

    UniProtKB/TrEMBL
    A0A3P8YIU3
    Related
    ENSELUP00000016512.1, ENSELUT00000025877.3
    Conserved Domains (3) summary
    cd01283
    Location:24 → 129
    cytidine_deaminase; Cytidine deaminase zinc-binding domain. These enzymes are Zn dependent. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on ...
    pfam05240
    Location:139 → 181
    APOBEC_C; APOBEC-like C-terminal domain
    pfam08210
    Location:15 → 194
    APOBEC_N; APOBEC-like N-terminal domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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