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rbfox1l RNA binding fox-1 homolog 1, like [ Esox lucius (northern pike) ]

Gene ID: 105019005, updated on 18-Jun-2024

Summary

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Gene symbol
rbfox1l
Gene description
RNA binding fox-1 homolog 1, like
See related
Ensembl:ENSELUG00000015077
Gene type
protein coding
RefSeq status
MODEL
Organism
Esox lucius
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Esociformes; Esocidae; Esox
Orthologs
zebrafish all
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Genomic context

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See rbfox1l in Genome Data Viewer
Location:
chromosome: 20
Exon count:
13
Annotation release Status Assembly Chr Location
104 current fEsoLuc1.pri (GCF_011004845.1) 20 NC_047588.1 (27941521..27957284, complement)
103 previous assembly Eluc_v4 (GCF_004634155.1) Linkage Group LG20 NC_025987.4 (18503942..18519689)

Chromosome 20 - NC_047588.1Genomic Context describing neighboring genes Neighboring gene CDC42 effector protein (Rho GTPase binding) 5 Neighboring gene leukocyte receptor cluster (LRC) member 8 Neighboring gene ribosomal protein S9 Neighboring gene membrane bound O-acyltransferase domain containing 7

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in nervous system development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of alternative mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
RNA binding protein fox-1 homolog 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Esox lucius Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fEsoLuc1.pri Primary Assembly

Genomic

  1. NC_047588.1 Reference fEsoLuc1.pri Primary Assembly

    Range
    27941521..27957284 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010884870.4 → XP_010883172.1  RNA binding protein fox-1 homolog 1-like isoform X6

    UniProtKB/TrEMBL
    A0A3P8YEL3
    Related
    ENSELUP00000015034.2, ENSELUT00000024001.3
    Conserved Domains (3) summary
    COG0724
    Location:140 → 237
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd12407
    Location:144 → 219
    RRM_FOX1_like; RNA recognition motif in vertebrate RNA binding protein fox-1 homologs and similar proteins
    pfam12414
    Location:258 → 352
    Fox-1_C; Calcitonin gene-related peptide regulator C terminal

  2. XM_010884868.4 → XP_010883170.1  RNA binding protein fox-1 homolog 1-like isoform X4

    UniProtKB/TrEMBL
    A0A3P8YEL3
    Conserved Domains (3) summary
    COG0724
    Location:140 → 237
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd12407
    Location:144 → 219
    RRM_FOX1_like; RNA recognition motif in vertebrate RNA binding protein fox-1 homologs and similar proteins
    pfam12414
    Location:258 → 357
    Fox-1_C; Calcitonin gene-related peptide regulator C terminal

  3. XM_010884867.4 → XP_010883169.1  RNA binding protein fox-1 homolog 1-like isoform X3

    UniProtKB/TrEMBL
    A0A3P8YEL3
    Conserved Domains (3) summary
    COG0724
    Location:140 → 237
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd12407
    Location:144 → 219
    RRM_FOX1_like; RNA recognition motif in vertebrate RNA binding protein fox-1 homologs and similar proteins
    pfam12414
    Location:266 → 360
    Fox-1_C; Calcitonin gene-related peptide regulator C terminal

  4. XM_010884864.4 → XP_010883166.1  RNA binding protein fox-1 homolog 1-like isoform X1

    UniProtKB/TrEMBL
    A0A3P8YEL3
    Conserved Domains (3) summary
    COG0724
    Location:140 → 237
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd12407
    Location:144 → 219
    RRM_FOX1_like; RNA recognition motif in vertebrate RNA binding protein fox-1 homologs and similar proteins
    pfam12414
    Location:266 → 365
    Fox-1_C; Calcitonin gene-related peptide regulator C terminal

  5. XM_010884866.4 → XP_010883168.1  RNA binding protein fox-1 homolog 1-like isoform X2

    UniProtKB/TrEMBL
    A0A3P8YEM3, A0A3P8YES2
    Related
    ENSELUP00000015079.1, ENSELUT00000024095.3
    Conserved Domains (3) summary
    COG0724
    Location:140 → 237
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd12407
    Location:144 → 219
    RRM_FOX1_like; RNA recognition motif in vertebrate RNA binding protein fox-1 homologs and similar proteins
    pfam12414
    Location:263 → 361
    Fox-1_C; Calcitonin gene-related peptide regulator C terminal

  6. XM_010884869.4 → XP_010883171.1  RNA binding protein fox-1 homolog 1-like isoform X5

    UniProtKB/TrEMBL
    A0A3P8YEM3
    Related
    ENSELUP00000015053.1, ENSELUT00000039180.3
    Conserved Domains (3) summary
    COG0724
    Location:131 → 228
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd12407
    Location:135 → 210
    RRM_FOX1_like; RNA recognition motif in vertebrate RNA binding protein fox-1 homologs and similar proteins
    pfam12414
    Location:257 → 356
    Fox-1_C; Calcitonin gene-related peptide regulator C terminal
Nucleotide Protein
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