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prpf3 PRP3 pre-mRNA processing factor 3 homolog (yeast) [ Esox lucius (northern pike) ]

Gene ID: 105018969, updated on 18-Jun-2024

Summary

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Gene symbol
prpf3
Gene description
PRP3 pre-mRNA processing factor 3 homolog (yeast)
See related
Ensembl:ENSELUG00000013624
Gene type
protein coding
RefSeq status
MODEL
Organism
Esox lucius
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Esociformes; Esocidae; Esox
Orthologs
human zebrafish all
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Genomic context

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See prpf3 in Genome Data Viewer
Location:
chromosome: 20
Exon count:
17
Annotation release Status Assembly Chr Location
104 current fEsoLuc1.pri (GCF_011004845.1) 20 NC_047588.1 (28430944..28444175)
103 previous assembly Eluc_v4 (GCF_004634155.1) Linkage Group LG20 NC_025987.4 (18019327..18033445, complement)

Chromosome 20 - NC_047588.1Genomic Context describing neighboring genes Neighboring gene carbonic anhydrase XIV Neighboring gene circadian-associated transcriptional repressor Neighboring gene regulation of nuclear pre-mRNA domain containing 2b Neighboring gene threonyl-tRNA synthetase 2, mitochondrial

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of U4/U6 x U5 tri-snRNP complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
U4/U6 small nuclear ribonucleoprotein Prp3
Names
pre-mRNA processing factor 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Esox lucius Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fEsoLuc1.pri Primary Assembly

Genomic

  1. NC_047588.1 Reference fEsoLuc1.pri Primary Assembly

    Range
    28430944..28444175
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020041516.3 → XP_019897075.2  U4/U6 small nuclear ribonucleoprotein Prp3

    UniProtKB/TrEMBL
    A0A6Q2XBZ1, A0A6Q2XPV6
    Related
    ENSELUP00000056059.1, ENSELUT00000075762.2
    Conserved Domains (3) summary
    pfam01480
    Location:9 → 76
    PWI; PWI domain
    pfam06544
    Location:577 → 700
    DUF1115; Protein of unknown function (DUF1115)
    pfam08572
    Location:339 → 552
    PRP3; pre-mRNA processing factor 3 (PRP3)
Nucleotide Protein
Heading Accession and Version

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