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rab9a RAB9A, member RAS oncogene family [ Esox lucius (northern pike) ]

Gene ID: 105018726, updated on 18-Jun-2024

Summary

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Gene symbol
rab9a
Gene description
RAB9A, member RAS oncogene family
See related
Ensembl:ENSELUG00000045532
Gene type
protein coding
RefSeq status
MODEL
Organism
Esox lucius
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Esociformes; Esocidae; Esox
Orthologs
human zebrafish all
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Genomic context

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See rab9a in Genome Data Viewer
Location:
chromosome: 20
Exon count:
4
Annotation release Status Assembly Chr Location
104 current fEsoLuc1.pri (GCF_011004845.1) 20 NC_047588.1 (37096440..37099390, complement)
103 previous assembly Eluc_v4 (GCF_004634155.1) Linkage Group LG20 NC_025987.4 (9465607..9468479)

Chromosome 20 - NC_047588.1Genomic Context describing neighboring genes Neighboring gene glycoprotein M6Bb Neighboring gene OFD1 centriole and centriolar satellite protein Neighboring gene trafficking protein particle complex subunit 2 Neighboring gene EGF-like-domain, multiple 6 Neighboring gene thymosin beta 4 X-linked

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables GTP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables GTPase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in Rab protein signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in retrograde transport, endosome to Golgi IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in late endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in lysosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in phagocytic vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ras-related protein Rab-9A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Esox lucius Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fEsoLuc1.pri Primary Assembly

Genomic

  1. NC_047588.1 Reference fEsoLuc1.pri Primary Assembly

    Range
    37096440..37099390 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010884379.4 → XP_010882681.1  ras-related protein Rab-9A

    See identical proteins and their annotated locations for XP_010882681.1

    UniProtKB/TrEMBL
    A0A3P9A7X4
    Related
    ENSELUP00000098028.1, ENSELUT00000089560.1
    Conserved Domains (2) summary
    cd04116
    Location:3 → 172
    Rab9; Rab GTPase family 9 (Rab9)
    pfam00071
    Location:9 → 173
    Ras; Ras family

  2. XM_010884378.4 → XP_010882680.1  ras-related protein Rab-9A

    See identical proteins and their annotated locations for XP_010882680.1

    UniProtKB/TrEMBL
    A0A3P9A7X4
    Conserved Domains (2) summary
    cd04116
    Location:3 → 172
    Rab9; Rab GTPase family 9 (Rab9)
    pfam00071
    Location:9 → 173
    Ras; Ras family

  3. XM_010884377.4 → XP_010882679.1  ras-related protein Rab-9A

    See identical proteins and their annotated locations for XP_010882679.1

    UniProtKB/TrEMBL
    A0A3P9A7X4
    Related
    ENSELUP00000085177.1, ENSELUT00000104631.1
    Conserved Domains (2) summary
    cd04116
    Location:3 → 172
    Rab9; Rab GTPase family 9 (Rab9)
    pfam00071
    Location:9 → 173
    Ras; Ras family
Nucleotide Protein
Heading Accession and Version

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