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det1 DET1 partner of COP1 E3 ubiquitin ligase [ Esox lucius (northern pike) ]

Gene ID: 105018512, updated on 18-Jun-2024

Summary

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Gene symbol
det1
Gene description
DET1 partner of COP1 E3 ubiquitin ligase
See related
Ensembl:ENSELUG00000001233
Gene type
protein coding
RefSeq status
MODEL
Organism
Esox lucius
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Esociformes; Esocidae; Esox
Orthologs
human zebrafish all
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Genomic context

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See det1 in Genome Data Viewer
Location:
chromosome: 19
Exon count:
6
Annotation release Status Assembly Chr Location
104 current fEsoLuc1.pri (GCF_011004845.1) 19 NC_047587.1 (29057803..29071684)
103 previous assembly Eluc_v4 (GCF_004634155.1) Linkage Group LG19 NC_025986.4 (29268104..29281867)

Chromosome 19 - NC_047587.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105018513 Neighboring gene microtubule-associated protein 1 light chain 3 beta Neighboring gene neurotrophic tyrosine kinase, receptor, type 3a Neighboring gene cytosolic carboxypeptidase 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ubiquitin protein ligase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin-like ligase-substrate adaptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of proteasomal ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein ubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of cullin-RING ubiquitin ligase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DET1 homolog
Names
DET1, COP1 ubiquitin ligase partner
de-etiolated homolog 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Esox lucius Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fEsoLuc1.pri Primary Assembly

Genomic

  1. NC_047587.1 Reference fEsoLuc1.pri Primary Assembly

    Range
    29057803..29071684
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010884009.3 → XP_010882311.1  DET1 homolog

    UniProtKB/TrEMBL
    A0A3P8Y354
    Related
    ENSELUP00000010094.2, ENSELUT00000002708.3
    Conserved Domains (1) summary
    pfam09737
    Location:142 → 547
    Det1; De-etiolated protein 1 Det1
Nucleotide Protein
Heading Accession and Version

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