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LOC105018470 ribosomal protein S13 [ Esox lucius (northern pike) ]

Gene ID: 105018470, updated on 18-Jun-2024

Summary

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Gene symbol
LOC105018470
Gene description
ribosomal protein S13
See related
Ensembl:ENSELUG00000003617
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Esox lucius
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Esociformes; Esocidae; Esox
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Genomic context

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See LOC105018470 in Genome Data Viewer
Location:
chromosome: 19
Exon count:
6
Annotation release Status Assembly Chr Location
104 current fEsoLuc1.pri (GCF_011004845.1) 19 NC_047587.1 (36616584..36621396, complement)
103 previous assembly Eluc_v4 (GCF_004634155.1) Linkage Group LG19 NC_025986.4 (36811322..36816142, complement)

Chromosome 19 - NC_047587.1Genomic Context describing neighboring genes Neighboring gene chromosome 19 C11orf58 homolog Neighboring gene pleckstrin homology domain-containing family A member 7 Neighboring gene protein phosphatase 1, regulatory subunit 15B Neighboring gene small nucleolar RNA SNORA19 Neighboring gene phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 alpha Neighboring gene uncharacterized LOC114829523 Neighboring gene nucleobindin 2b

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables small ribosomal subunit rRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in translation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of cytosolic small ribosomal subunit IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
40S ribosomal protein S13
NP_001290812.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001303883.1 → NP_001290812.1  40S ribosomal protein S13

    See identical proteins and their annotated locations for NP_001290812.1

    Status: PROVISIONAL

    Source sequence(s)
    BT079323
    UniProtKB/TrEMBL
    A0A3P8XF24, C1BXJ4
    Related
    ENSELUP00000094796.1, ENSELUT00000107013.1
    Conserved Domains (3) summary
    PTZ00072
    Location:4 → 151
    PTZ00072; 40S ribosomal protein S13; Provisional
    cd00353
    Location:70 → 145
    Ribosomal_S15p_S13e; Ribosomal protein S15 (prokaryotic)_S13 (eukaryotic) binds the central domain of 16S rRNA and is required for assembly of the small ribosomal subunit and for intersubunit association, thus representing a key element in the assembly of the whole ribosome. ...
    pfam08069
    Location:4 → 60
    Ribosomal_S13_N; Ribosomal S13/S15 N-terminal domain

RefSeqs of Annotated Genomes: Esox lucius Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fEsoLuc1.pri Primary Assembly

Genomic

  1. NC_047587.1 Reference fEsoLuc1.pri Primary Assembly

    Range
    36616584..36621396 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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