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tmtc3 transmembrane O-mannosyltransferase targeting cadherins 3 [ Esox lucius (northern pike) ]

Gene ID: 105018307, updated on 18-Jun-2024

Summary

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Gene symbol
tmtc3
Gene description
transmembrane O-mannosyltransferase targeting cadherins 3
See related
Ensembl:ENSELUG00000011884
Gene type
protein coding
RefSeq status
MODEL
Organism
Esox lucius
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Esociformes; Esocidae; Esox
Orthologs
human zebrafish all
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Genomic context

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See tmtc3 in Genome Data Viewer
Location:
chromosome: 19
Exon count:
17
Annotation release Status Assembly Chr Location
104 current fEsoLuc1.pri (GCF_011004845.1) 19 NC_047587.1 (10041172..10112329, complement)
103 previous assembly Eluc_v4 (GCF_004634155.1) Linkage Group LG19 NC_025986.4 (10245807..10314016, complement)

Chromosome 19 - NC_047587.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 23 member 2 Neighboring gene uncharacterized LOC105018302 Neighboring gene kit ligand a Neighboring gene centrosomal protein 290 Neighboring gene lymphatic vessel endothelial hyaluronic receptor 1b Neighboring gene RNA 5'-phosphate and 3'-OH ligase 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein O-linked mannosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein O-mannosyl-transferase TMTC3
Names
transmembrane and tetratricopeptide repeat containing 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Esox lucius Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fEsoLuc1.pri Primary Assembly

Genomic

  1. NC_047587.1 Reference fEsoLuc1.pri Primary Assembly

    Range
    10041172..10112329 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010883616.5 → XP_010881918.1  protein O-mannosyl-transferase TMTC3

    See identical proteins and their annotated locations for XP_010881918.1

    UniProtKB/TrEMBL
    A0A3P8Y4D7, A0A3P8ZYB3
    Conserved Domains (3) summary
    sd00006
    Location:529 → 556
    TPR; TPR repeat [structural motif]
    pfam08409
    Location:259 → 331
    DUF1736; Domain of unknown function (DUF1736)
    cl26002
    Location:442 → 801
    TPR_11; TPR repeat

  2. XM_020040226.3 → XP_019895785.1  protein O-mannosyl-transferase TMTC3

    UniProtKB/TrEMBL
    A0A3P8Y4D7, A0A3P8ZYB3
    Conserved Domains (3) summary
    sd00006
    Location:529 → 556
    TPR; TPR repeat [structural motif]
    pfam08409
    Location:259 → 331
    DUF1736; Domain of unknown function (DUF1736)
    cl26002
    Location:442 → 801
    TPR_11; TPR repeat

  3. XM_010883614.5 → XP_010881916.1  protein O-mannosyl-transferase TMTC3

    See identical proteins and their annotated locations for XP_010881916.1

    UniProtKB/TrEMBL
    A0A3P8Y4D7, A0A3P8ZYB3
    Conserved Domains (3) summary
    sd00006
    Location:529 → 556
    TPR; TPR repeat [structural motif]
    pfam08409
    Location:259 → 331
    DUF1736; Domain of unknown function (DUF1736)
    cl26002
    Location:442 → 801
    TPR_11; TPR repeat

  4. XM_010883613.5 → XP_010881915.1  protein O-mannosyl-transferase TMTC3

    See identical proteins and their annotated locations for XP_010881915.1

    UniProtKB/TrEMBL
    A0A3P8Y4D7, A0A3P8ZYB3
    Related
    ENSELUP00000033566.1, ENSELUT00000000358.3
    Conserved Domains (3) summary
    sd00006
    Location:529 → 556
    TPR; TPR repeat [structural motif]
    pfam08409
    Location:259 → 331
    DUF1736; Domain of unknown function (DUF1736)
    cl26002
    Location:442 → 801
    TPR_11; TPR repeat

  5. XM_010883615.5 → XP_010881917.1  protein O-mannosyl-transferase TMTC3

    See identical proteins and their annotated locations for XP_010881917.1

    UniProtKB/TrEMBL
    A0A3P8Y4D7, A0A3P8ZYB3
    Related
    ENSELUP00000062423.2, ENSELUT00000073309.2
    Conserved Domains (3) summary
    sd00006
    Location:529 → 556
    TPR; TPR repeat [structural motif]
    pfam08409
    Location:259 → 331
    DUF1736; Domain of unknown function (DUF1736)
    cl26002
    Location:442 → 801
    TPR_11; TPR repeat
Nucleotide Protein
Heading Accession and Version

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