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arl8bb ADP-ribosylation factor-like 8Bb [ Esox lucius (northern pike) ]

Gene ID: 105017426, updated on 18-Jun-2024

Summary

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Gene symbol
arl8bb
Gene description
ADP-ribosylation factor-like 8Bb
See related
Ensembl:ENSELUG00000009390
Gene type
protein coding
RefSeq status
MODEL
Organism
Esox lucius
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Esociformes; Esocidae; Esox
Also known as
arl8b
Orthologs
zebrafish all
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Genomic context

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See arl8bb in Genome Data Viewer
Location:
chromosome: 17
Exon count:
8
Annotation release Status Assembly Chr Location
104 current fEsoLuc1.pri (GCF_011004845.1) 17 NC_047585.1 (17375867..17401480)
103 previous assembly Eluc_v4 (GCF_004634155.1) Linkage Group LG17 NC_025984.4 (31282303..31307809, complement)

Chromosome 17 - NC_047585.1Genomic Context describing neighboring genes Neighboring gene inositol 1,4,5-trisphosphate receptor, type 1b Neighboring gene basic helix-loop-helix family, member e40 Neighboring gene sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Fb Neighboring gene CaM kinase-like vesicle-associated b

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome and linkage map of the northern pike (Esox lucius): conserved synteny revealed between the salmonid sister group and the Neoteleostei. Rondeau EB, et al. PLoS One, 2014. PMID 25069045, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables GTP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables GTPase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in anterograde axonal transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in lysosomal membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ADP-ribosylation factor-like 8Bb
Names
ADP-ribosylation factor-like 8B
ADP-ribosylation factor-like protein 8B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Esox lucius Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fEsoLuc1.pri Primary Assembly

Genomic

  1. NC_047585.1 Reference fEsoLuc1.pri Primary Assembly

    Range
    17375867..17401480
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034287538.1 → XP_034143429.1  ADP-ribosylation factor-like 8Bb

    UniProtKB/TrEMBL
    A0A3P8ZH99
    Conserved Domains (1) summary
    cd04159
    Location:79 → 237
    Arl10_like; Arf-like 9 (Arl9) and 10 (Arl10) GTPases

  2. XM_010882042.3 → XP_010880344.2  ADP-ribosylation factor-like 8Bb

    UniProtKB/TrEMBL
    A0A3P8ZH99
    Related
    ENSELUP00000089994.1, ENSELUT00000088322.1
    Conserved Domains (1) summary
    cd04159
    Location:79 → 237
    Arl10_like; Arf-like 9 (Arl9) and 10 (Arl10) GTPases
Nucleotide Protein
Heading Accession and Version

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