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eefsec eukaryotic elongation factor, selenocysteine-tRNA-specific [ Esox lucius (northern pike) ]

Gene ID: 105017225, updated on 18-Jun-2024

Summary

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Gene symbol
eefsec
Gene description
eukaryotic elongation factor, selenocysteine-tRNA-specific
See related
Ensembl:ENSELUG00000016632
Gene type
protein coding
RefSeq status
MODEL
Organism
Esox lucius
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Esociformes; Esocidae; Esox
Orthologs
human zebrafish all
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Genomic context

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See eefsec in Genome Data Viewer
Location:
chromosome: 17
Exon count:
7
Annotation release Status Assembly Chr Location
104 current fEsoLuc1.pri (GCF_011004845.1) 17 NC_047585.1 (28013112..28031340)
103 previous assembly Eluc_v4 (GCF_004634155.1) Linkage Group LG17 NC_025984.4 (20692094..20710449, complement)

Chromosome 17 - NC_047585.1Genomic Context describing neighboring genes Neighboring gene musculoskeletal, embryonic nuclear protein 1a Neighboring gene RuvB-like AAA ATPase 1 Neighboring gene GATA binding protein 2b Neighboring gene fibrinogen-like protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables GTP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables GTPase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables translation elongation factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in selenocysteine incorporation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
selenocysteine-specific elongation factor

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Esox lucius Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fEsoLuc1.pri Primary Assembly

Genomic

  1. NC_047585.1 Reference fEsoLuc1.pri Primary Assembly

    Range
    28013112..28031340
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034287135.1 → XP_034143026.1  selenocysteine-specific elongation factor

    UniProtKB/TrEMBL
    A0A3P9A8S8
    Related
    ENSELUP00000037107.3, ENSELUT00000026331.3
    Conserved Domains (3) summary
    cd01889
    Location:14 → 207
    SelB_euk; SelB, the dedicated elongation factor for delivery of selenocysteinyl-tRNA to the ribosome
    cd03696
    Location:220 → 302
    SelB_II; Domain II of elongation factor SelB
    cd04094
    Location:307 → 440
    eSelB_III; Domain III of eukaryotic and archaeal elongation factor SelB
Nucleotide Protein
Heading Accession and Version

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