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b4galnt1b beta-1,4-N-acetyl-galactosaminyl transferase 1b [ Esox lucius (northern pike) ]

Gene ID: 105017218, updated on 18-Jun-2024

Summary

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Gene symbol
b4galnt1b
Gene description
beta-1,4-N-acetyl-galactosaminyl transferase 1b
See related
Ensembl:ENSELUG00000015811
Gene type
protein coding
RefSeq status
MODEL
Organism
Esox lucius
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Esociformes; Esocidae; Esox
Also known as
b4galnt1
Orthologs
human zebrafish all
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Genomic context

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See b4galnt1b in Genome Data Viewer
Location:
chromosome: 17
Exon count:
12
Annotation release Status Assembly Chr Location
104 current fEsoLuc1.pri (GCF_011004845.1) 17 NC_047585.1 (27545615..27577495)
103 previous assembly Eluc_v4 (GCF_004634155.1) Linkage Group LG17 NC_025984.4 (21146734..21178394, complement)

Chromosome 17 - NC_047585.1Genomic Context describing neighboring genes Neighboring gene core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1, like b Neighboring gene OS9 endoplasmic reticulum lectin Neighboring gene uncharacterized LOC109616801 Neighboring gene transcription factor Sp5-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hexosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ganglioside biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in lipid glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
beta-1,4 N-acetylgalactosaminyltransferase 1
Names
beta-1,4-N-acetyl-galactosaminyltransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Esox lucius Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fEsoLuc1.pri Primary Assembly

Genomic

  1. NC_047585.1 Reference fEsoLuc1.pri Primary Assembly

    Range
    27545615..27577495
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010881632.3 → XP_010879934.1  beta-1,4 N-acetylgalactosaminyltransferase 1

    See identical proteins and their annotated locations for XP_010879934.1

    UniProtKB/TrEMBL
    A0A3P8YH49
    Related
    ENSELUP00000015923.1, ENSELUT00000025131.3
    Conserved Domains (2) summary
    COG0463
    Location:277 → 375
    WcaA; Glycosyltransferase involved in cell wall bisynthesis [Cell wall/membrane/envelope biogenesis]
    pfam00535
    Location:279 → 402
    Glycos_transf_2; Glycosyl transferase family 2

  2. XM_010881635.3 → XP_010879937.1  beta-1,4 N-acetylgalactosaminyltransferase 1

    See identical proteins and their annotated locations for XP_010879937.1

    UniProtKB/TrEMBL
    A0A3P8YH49
    Conserved Domains (2) summary
    COG0463
    Location:277 → 375
    WcaA; Glycosyltransferase involved in cell wall bisynthesis [Cell wall/membrane/envelope biogenesis]
    pfam00535
    Location:279 → 402
    Glycos_transf_2; Glycosyl transferase family 2

  3. XM_010881634.3 → XP_010879936.1  beta-1,4 N-acetylgalactosaminyltransferase 1

    See identical proteins and their annotated locations for XP_010879936.1

    UniProtKB/TrEMBL
    A0A3P8YH49
    Conserved Domains (2) summary
    COG0463
    Location:277 → 375
    WcaA; Glycosyltransferase involved in cell wall bisynthesis [Cell wall/membrane/envelope biogenesis]
    pfam00535
    Location:279 → 402
    Glycos_transf_2; Glycosyl transferase family 2
Nucleotide Protein
Heading Accession and Version

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