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rab5c RAB5C, member RAS oncogene family [ Esox lucius (northern pike) ]

Gene ID: 105013346, updated on 18-Jun-2024

Summary

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Gene symbol
rab5c
Gene description
RAB5C, member RAS oncogene family
See related
Ensembl:ENSELUG00000018516
Gene type
protein coding
RefSeq status
MODEL
Organism
Esox lucius
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Esociformes; Esocidae; Esox
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 11
Exon count:
6
Annotation release Status Assembly Chr Location
104 current fEsoLuc1.pri (GCF_011004845.1) 11 NC_047579.1 (42358101..42382649, complement)
103 previous assembly Eluc_v4 (GCF_004634155.1) Linkage Group LG11 NC_025978.4 (12933878..12960745)

Chromosome 11 - NC_047579.1Genomic Context describing neighboring genes Neighboring gene DEXH (Asp-Glu-X-His) box polypeptide 58 Neighboring gene K(lysine) acetyltransferase 2A Neighboring gene potassium voltage-gated channel, subfamily H (eag-related), member 4a Neighboring gene hypocretin (orexin) neuropeptide precursor

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables GTP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables GTPase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ras-related protein Rab-5C

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Esox lucius Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fEsoLuc1.pri Primary Assembly

Genomic

  1. NC_047579.1 Reference fEsoLuc1.pri Primary Assembly

    Range
    42358101..42382649 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010874808.3 → XP_010873110.1  ras-related protein Rab-5C

    UniProtKB/TrEMBL
    A0A3P8YRI6, A0A6Q2YF11
    Related
    ENSELUP00000085366.1, ENSELUT00000090611.1
    Conserved Domains (2) summary
    cd01860
    Location:21 → 183
    Rab5_related; Rab-related GTPase family includes Rab5 and Rab22; regulates early endosome fusion
    pfam00071
    Location:23 → 184
    Ras; Ras family
Nucleotide Protein
Heading Accession and Version

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