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LOC105013131 septin-9-like [ Esox lucius (northern pike) ]

Gene ID: 105013131, updated on 18-Jun-2024

Summary

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Gene symbol
LOC105013131
Gene description
septin-9-like
See related
Ensembl:ENSELUG00000008019
Gene type
protein coding
RefSeq status
MODEL
Organism
Esox lucius
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Esociformes; Esocidae; Esox
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Genomic context

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See LOC105013131 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
18
Annotation release Status Assembly Chr Location
104 current fEsoLuc1.pri (GCF_011004845.1) 11 NC_047579.1 (34804143..34904184)
103 previous assembly Eluc_v4 (GCF_004634155.1) Linkage Group LG11 NC_025978.4 (20211729..20307583, complement)

Chromosome 11 - NC_047579.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC109615311 Neighboring gene uncharacterized LOC109616347 Neighboring gene trinucleotide repeat containing adaptor 6C1 Neighboring gene uncharacterized LOC105013133

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables GTP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables GTPase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables molecular adaptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cytoskeleton-dependent cytokinesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell division site IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in microtubule cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of septin complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in septin ring IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
neuronal-specific septin-3-like; septin-9-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Esox lucius Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fEsoLuc1.pri Primary Assembly

Genomic

  1. NC_047579.1 Reference fEsoLuc1.pri Primary Assembly

    Range
    34804143..34904184
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010874441.4 → XP_010872743.1  neuronal-specific septin-3-like isoform X3

    UniProtKB/TrEMBL
    A0A3P8XV51, A0A6Q2YH12
    Related
    ENSELUP00000007193.1, ENSELUT00000007660.3
    Conserved Domains (3) summary
    cd01850
    Location:348 → 622
    CDC_Septin; CDC/Septin GTPase family
    COG5019
    Location:330 → 633
    CDC3; Septin family protein [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton]
    pfam15384
    Location:106 → 242
    PAXX; PAXX, PAralog of XRCC4 and XLF, also called C9orf142

  2. XM_010874444.3 → XP_010872746.1  neuronal-specific septin-3-like isoform X5

    UniProtKB/TrEMBL
    A0A3P8XV40, A0A6Q2YH12
    Related
    ENSELUP00000047374.2, ENSELUT00000065302.2
    Conserved Domains (3) summary
    cd01850
    Location:324 → 598
    CDC_Septin; CDC/Septin GTPase family
    COG5019
    Location:306 → 609
    CDC3; Septin family protein [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton]
    pfam15384
    Location:82 → 218
    PAXX; PAXX, PAralog of XRCC4 and XLF, also called C9orf142

  3. XM_010874439.4 → XP_010872741.2  septin-9-like isoform X2

    UniProtKB/TrEMBL
    A0A3P8XTS8
    Conserved Domains (2) summary
    cd01850
    Location:376 → 650
    CDC_Septin; CDC/Septin GTPase family
    PHA03247
    Location:101 → 352
    PHA03247; large tegument protein UL36; Provisional

  4. XM_010874438.4 → XP_010872740.2  neuronal-specific septin-3-like isoform X1

    UniProtKB/TrEMBL
    A0A6Q2YH12
    Related
    ENSELUP00000007149.2, ENSELUT00000007733.3
    Conserved Domains (2) summary
    cd01850
    Location:335 → 609
    CDC_Septin; CDC/Septin GTPase family
    cl26464
    Location:60 → 311
    Atrophin-1; Atrophin-1 family

  5. XM_010874442.4 → XP_010872744.1  neuronal-specific septin-3-like isoform X1

    UniProtKB/TrEMBL
    A0A6Q2YH12
    Related
    ENSELUP00000030689.2, ENSELUT00000007702.3
    Conserved Domains (2) summary
    cd01850
    Location:335 → 609
    CDC_Septin; CDC/Septin GTPase family
    cl26464
    Location:60 → 311
    Atrophin-1; Atrophin-1 family

  6. XM_010874443.3 → XP_010872745.1  neuronal-specific septin-3-like isoform X4

    UniProtKB/TrEMBL
    A0A3P8XRF1, A0A6Q2YH12
    Related
    ENSELUP00000007136.1, ENSELUT00000007771.3
    Conserved Domains (3) summary
    cd01850
    Location:328 → 602
    CDC_Septin; CDC/Septin GTPase family
    COG5019
    Location:310 → 613
    CDC3; Septin family protein [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton]
    pfam15384
    Location:86 → 222
    PAXX; PAXX, PAralog of XRCC4 and XLF, also called C9orf142

  7. XM_010874445.3 → XP_010872747.1  septin-9-like isoform X7

    UniProtKB/TrEMBL
    A0A6Q2WYF3
    Conserved Domains (2) summary
    cd01850
    Location:53 → 327
    CDC_Septin; CDC/Septin GTPase family
    COG5019
    Location:35 → 338
    CDC3; Septin family protein [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton]

  8. XM_034295345.1 → XP_034151236.1  septin-9-like isoform X6

    UniProtKB/TrEMBL
    A0A6Q2WYF3
    Conserved Domains (1) summary
    cd01850
    Location:79 → 353
    CDC_Septin; CDC/Septin GTPase family
Nucleotide Protein
Heading Accession and Version

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