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LOC105012605 ras-related protein Rab-25 [ Esox lucius (northern pike) ]

Gene ID: 105012605, updated on 18-Jun-2024

Summary

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Gene symbol
LOC105012605
Gene description
ras-related protein Rab-25
See related
Ensembl:ENSELUG00000006604
Gene type
protein coding
RefSeq status
MODEL
Organism
Esox lucius
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Esociformes; Esocidae; Esox
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Genomic context

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See LOC105012605 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
5
Annotation release Status Assembly Chr Location
104 current fEsoLuc1.pri (GCF_011004845.1) 10 NC_047578.1 (12607257..12609989, complement)
103 previous assembly Eluc_v4 (GCF_004634155.1) Linkage Group LG10 NC_025977.4 (12689721..12693120, complement)

Chromosome 10 - NC_047578.1Genomic Context describing neighboring genes Neighboring gene shugoshin 1 Neighboring gene zinc finger protein 385D Neighboring gene ubiquilin-4 Neighboring gene lens fiber membrane intrinsic protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome and linkage map of the northern pike (Esox lucius): conserved synteny revealed between the salmonid sister group and the Neoteleostei. Rondeau EB, et al. PLoS One, 2014. PMID 25069045, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables GTP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables GTPase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in exocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in recycling endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ras-related protein Rab-25

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Esox lucius Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fEsoLuc1.pri Primary Assembly

Genomic

  1. NC_047578.1 Reference fEsoLuc1.pri Primary Assembly

    Range
    12607257..12609989 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013135532.4 → XP_012990986.2  ras-related protein Rab-25 isoform X2

    Conserved Domains (1) summary
    cd01868
    Location:8 → 168
    Rab11_like; Rab GTPase family 11 (Rab11)-like includes Rab11a, Rab11b, and Rab25

  2. XM_013135531.4 → XP_012990985.2  ras-related protein Rab-25 isoform X1

    Related
    ENSELUP00000005612.3, ENSELUT00000010371.3
    Conserved Domains (1) summary
    cd01868
    Location:8 → 169
    Rab11_like; Rab GTPase family 11 (Rab11)-like includes Rab11a, Rab11b, and Rab25

  3. XM_013135533.4 → XP_012990987.4  ras-related protein Rab-25 isoform X3

    UniProtKB/TrEMBL
    A0A3P8XM41
    Conserved Domains (1) summary
    cd01868
    Location:8 → 171
    Rab11_like; Rab GTPase family 11 (Rab11)-like includes Rab11a, Rab11b, and Rab25
Nucleotide Protein
Heading Accession and Version

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