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septin7a septin 7a [ Esox lucius (northern pike) ]

Gene ID: 105012554, updated on 18-Jun-2024

Summary

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Gene symbol
septin7a
Gene description
septin 7a
See related
Ensembl:ENSELUG00000008840
Gene type
protein coding
RefSeq status
MODEL
Organism
Esox lucius
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Esociformes; Esocidae; Esox
Also known as
sept7; sept7a; septin7
Orthologs
human zebrafish all
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Genomic context

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See septin7a in Genome Data Viewer
Location:
chromosome: 10
Exon count:
16
Annotation release Status Assembly Chr Location
104 current fEsoLuc1.pri (GCF_011004845.1) 10 NC_047578.1 (13483709..13519583, complement)
103 previous assembly Eluc_v4 (GCF_004634155.1) Linkage Group LG10 NC_025977.4 (13585135..13619401, complement)

Chromosome 10 - NC_047578.1Genomic Context describing neighboring genes Neighboring gene microtubule associated tyrosine carboxypeptidase 2 Neighboring gene endonuclease/exonuclease/phosphatase family domain containing 1 Neighboring gene leucine rich repeat containing 3B Neighboring gene 3-oxoacyl-ACP synthase, mitochondrial

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome and linkage map of the northern pike (Esox lucius): conserved synteny revealed between the salmonid sister group and the Neoteleostei. Rondeau EB, et al. PLoS One, 2014. PMID 25069045, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables GTP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables GTPase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables molecular adaptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cilium assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cytoskeleton-dependent cytokinesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell division site IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in microtubule cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of septin complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in septin ring IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
septin 7a

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Esox lucius Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fEsoLuc1.pri Primary Assembly

Genomic

  1. NC_047578.1 Reference fEsoLuc1.pri Primary Assembly

    Range
    13483709..13519583 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013135566.4 → XP_012991020.1  septin 7a isoform X1

    UniProtKB/TrEMBL
    A0A3P8XXT8
    Related
    ENSELUP00000008159.2, ENSELUT00000006038.3
    Conserved Domains (4) summary
    cd01850
    Location:44 → 314
    CDC_Septin; CDC/Septin GTPase family
    COG5019
    Location:26 → 414
    CDC3; Septin family protein [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton]
    cd16269
    Location:416 → 427
    GBP_C; coiled coil [structural motif]
    cl20817
    Location:342 → 427
    GBP_C; Guanylate-binding protein, C-terminal domain

  2. XM_020050336.3 → XP_019905895.1  septin 7a isoform X3

    UniProtKB/TrEMBL
    A0A3P8ZRD8
    Related
    ENSELUP00000069458.2, ENSELUT00000053571.2
    Conserved Domains (2) summary
    cd01850
    Location:1 → 264
    CDC_Septin; CDC/Septin GTPase family
    cl25602
    Location:291 → 389
    DUF3552; Domain of unknown function (DUF3552)

  3. XM_013135567.4 → XP_012991021.1  septin 7a isoform X2

    UniProtKB/TrEMBL
    A0A3P8XXT8
    Conserved Domains (4) summary
    cd01850
    Location:44 → 314
    CDC_Septin; CDC/Septin GTPase family
    COG5019
    Location:26 → 407
    CDC3; Septin family protein [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton]
    cd16269
    Location:409 → 420
    GBP_C; coiled coil [structural motif]
    cl20817
    Location:335 → 420
    GBP_C; Guanylate-binding protein, C-terminal domain
Nucleotide Protein
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