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lsg1 large 60S subunit nuclear export GTPase 1 [ Esox lucius (northern pike) ]

Gene ID: 105011425, updated on 18-Jun-2024

Summary

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Gene symbol
lsg1
Gene description
large 60S subunit nuclear export GTPase 1
See related
Ensembl:ENSELUG00000023973
Gene type
protein coding
RefSeq status
MODEL
Organism
Esox lucius
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Esociformes; Esocidae; Esox
Orthologs
human zebrafish all
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Genomic context

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See lsg1 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
14
Annotation release Status Assembly Chr Location
104 current fEsoLuc1.pri (GCF_011004845.1) 8 NC_047576.1 (9725389..9731711, complement)
103 previous assembly Eluc_v4 (GCF_004634155.1) Linkage Group LG08 NC_025975.4 (9765957..9772289, complement)

Chromosome 8 - NC_047576.1Genomic Context describing neighboring genes Neighboring gene ATPase 13A3 Neighboring gene transmembrane protein 44 Neighboring gene family with sequence similarity 43 member A Neighboring gene xyloside xylosyltransferase 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables GTP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables GTPase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ribosomal subunit export from nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
large subunit GTPase 1 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Esox lucius Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fEsoLuc1.pri Primary Assembly

Genomic

  1. NC_047576.1 Reference fEsoLuc1.pri Primary Assembly

    Range
    9725389..9731711 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010871429.4 → XP_010869731.2  large subunit GTPase 1 homolog

    UniProtKB/TrEMBL
    A0A6Q2Y762
    Related
    ENSELUP00000061820.2, ENSELUT00000043875.2
    Conserved Domains (3) summary
    cd01857
    Location:161 → 434
    HSR1_MMR1; A circularly permuted subfamily of the Ras GTPases
    COG1161
    Location:149 → 562
    RbgA; Ribosome biogenesis GTPase A [Translation, ribosomal structure and biogenesis]
    cl38936
    Location:333 → 411
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases
Nucleotide Protein
Heading Accession and Version

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