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trmt13 tRNA methyltransferase 13 homolog [ Esox lucius (northern pike) ]

Gene ID: 105011372, updated on 18-Jun-2024

Summary

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Gene symbol
trmt13
Gene description
tRNA methyltransferase 13 homolog
See related
Ensembl:ENSELUG00000003803
Gene type
protein coding
RefSeq status
MODEL
Organism
Esox lucius
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Esociformes; Esocidae; Esox
Orthologs
human zebrafish all
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Genomic context

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See trmt13 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
11
Annotation release Status Assembly Chr Location
104 current fEsoLuc1.pri (GCF_011004845.1) 8 NC_047576.1 (8192522..8196578)
103 previous assembly Eluc_v4 (GCF_004634155.1) Linkage Group LG08 NC_025975.4 (8205873..8209915)

Chromosome 8 - NC_047576.1Genomic Context describing neighboring genes Neighboring gene hippocampus abundant transcript 1 protein Neighboring gene SAS-6 centriolar assembly protein Neighboring gene leucine rich repeat containing 39 Neighboring gene small nucleolar RNA SNORD94 Neighboring gene dihydrolipoamide branched chain transacylase E2 Neighboring gene RNA 3'-terminal phosphate cyclase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables tRNA 2'-O-methyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in tRNA methylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tRNA:m(4)X modification enzyme TRM13 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Esox lucius Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fEsoLuc1.pri Primary Assembly

Genomic

  1. NC_047576.1 Reference fEsoLuc1.pri Primary Assembly

    Range
    8192522..8196578
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010871351.3 → XP_010869653.1  tRNA:m(4)X modification enzyme TRM13 homolog

    UniProtKB/TrEMBL
    A0A3P8XCV1
    Related
    ENSELUP00000097704.1, ENSELUT00000092351.1
    Conserved Domains (3) summary
    pfam05206
    Location:163 → 465
    TRM13; Methyltransferase TRM13
    pfam05253
    Location:55 → 78
    zf-U11-48K; U11-48K-like CHHC zinc finger
    pfam11722
    Location:15 → 43
    zf-TRM13_CCCH; CCCH zinc finger in TRM13 protein
Nucleotide Protein
Heading Accession and Version

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