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LOC105011047 40S ribosomal protein S3-like [ Esox lucius (northern pike) ]

Gene ID: 105011047, updated on 18-Jun-2024

Summary

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Gene symbol
LOC105011047
Gene description
40S ribosomal protein S3-like
See related
Ensembl:ENSELUG00000017575
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Esox lucius
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Esociformes; Esocidae; Esox
Also known as
RS3
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Genomic context

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See LOC105011047 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
7
Annotation release Status Assembly Chr Location
104 current fEsoLuc1.pri (GCF_011004845.1) 7 NC_047575.1 (30167203..30179373, complement)
103 previous assembly Eluc_v4 (GCF_004634155.1) Linkage Group LG07 NC_025974.4 (20710159..20722306)

Chromosome 7 - NC_047575.1Genomic Context describing neighboring genes Neighboring gene methylosome subunit pICln Neighboring gene remodeling and spacing factor 1b, tandem duplicate 1 Neighboring gene F-BAR and double SH3 domains protein 2 Neighboring gene protein FAM168A

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome and linkage map of the northern pike (Esox lucius): conserved synteny revealed between the salmonid sister group and the Neoteleostei. Rondeau EB, et al. PLoS One, 2014. PMID 25069045, Free PMC Article
  2. Salmo salar and Esox lucius full-length cDNA sequences reveal changes in evolutionary pressures on a post-tetraploidization genome. Leong JS, et al. BMC Genomics, 2010 Apr 30. PMID 20433749, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of apoptotic signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in translation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of cytosolic small ribosomal subunit IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
40S ribosomal protein S3-like
Names
40S ribosomal protein S3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001303884.1 → NP_001290813.1  40S ribosomal protein S3-like

    See identical proteins and their annotated locations for NP_001290813.1

    Status: PROVISIONAL

    Source sequence(s)
    BT079154
    UniProtKB/TrEMBL
    A0A3P8YPY9, C1BX25
    Related
    ENSELUP00000017951.3, ENSELUT00000040394.3
    Conserved Domains (3) summary
    cd02413
    Location:15 → 95
    40S_S3_KH; K homology RNA-binding (KH) domain of the eukaryotic 40S small ribosomal subunit protein S3. S3 is part of the head region of the 40S ribosomal subunit and is believed to interact with mRNA as it threads its way from the latch into the channel. The KH ...
    PTZ00084
    Location:4 → 220
    PTZ00084; 40S ribosomal protein S3; Provisional
    pfam00189
    Location:105 → 186
    Ribosomal_S3_C; Ribosomal protein S3, C-terminal domain

RefSeqs of Annotated Genomes: Esox lucius Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fEsoLuc1.pri Primary Assembly

Genomic

  1. NC_047575.1 Reference fEsoLuc1.pri Primary Assembly

    Range
    30167203..30179373 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020047701.3 → XP_019903260.3  40S ribosomal protein S3-like isoform X1

    UniProtKB/TrEMBL
    A0A3P8YPY9
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases