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LOC105009400 suppressor of cytokine signaling 1 [ Esox lucius (northern pike) ]

Gene ID: 105009400, updated on 18-Jun-2024

Summary

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Gene symbol
LOC105009400
Gene description
suppressor of cytokine signaling 1
See related
Ensembl:ENSELUG00000031681
Gene type
protein coding
RefSeq status
MODEL
Organism
Esox lucius
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Esociformes; Esocidae; Esox
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Genomic context

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See LOC105009400 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
3
Annotation release Status Assembly Chr Location
104 current fEsoLuc1.pri (GCF_011004845.1) 9 NC_047577.1 (1463014..1468878, complement)
103 previous assembly Eluc_v4 (GCF_004634155.1) Linkage Group LG09 NC_025976.4 (2877705..2883537)

Chromosome 9 - NC_047577.1Genomic Context describing neighboring genes Neighboring gene glutamate receptor ionotropic, NMDA 2A Neighboring gene uncharacterized LOC117594838 Neighboring gene Golgi apparatus membrane protein TVP23 homolog A Neighboring gene uncharacterized LOC114828667 Neighboring gene uncharacterized LOC105009878

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 1-phosphatidylinositol-3-kinase regulator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in intracellular signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in phosphatidylinositol phosphate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of phosphatidylinositol 3-kinase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
suppressor of cytokine signaling 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Esox lucius Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fEsoLuc1.pri Primary Assembly

Genomic

  1. NC_047577.1 Reference fEsoLuc1.pri Primary Assembly

    Range
    1463014..1468878 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010868826.4 → XP_010867128.1  suppressor of cytokine signaling 1

    UniProtKB/TrEMBL
    A0A6Q2Z2G5
    Related
    ENSELUP00000071965.1, ENSELUT00000058820.2
    Conserved Domains (2) summary
    cl02533
    Location:248 → 293
    SOCS; SOCS (suppressors of cytokine signaling) box. The SOCS box is found in the C-terminal region of CIS/SOCS family proteins (in combination with a SH2 domain), ASBs (ankyrin repeat-containing proteins with a SOCS box), SSBs (SPRY domain-containing proteins ...
    cl15255
    Location:150 → 236
    SH2; Src homology 2 (SH2) domain
Nucleotide Protein
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