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socs1a suppressor of cytokine signaling 1a [ Esox lucius (northern pike) ]

Gene ID: 105007127, updated on 18-Jun-2024

Summary

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Gene symbol
socs1a
Gene description
suppressor of cytokine signaling 1a
See related
Ensembl:ENSELUG00000036481
Gene type
protein coding
RefSeq status
MODEL
Organism
Esox lucius
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Esociformes; Esocidae; Esox
Also known as
socs1
Orthologs
human zebrafish all
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Genomic context

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See socs1a in Genome Data Viewer
Location:
chromosome: 11
Exon count:
4
Annotation release Status Assembly Chr Location
104 current fEsoLuc1.pri (GCF_011004845.1) 11 NC_047579.1 (52746537..52750276, complement)
103 previous assembly Eluc_v4 (GCF_004634155.1) Linkage Group LG11 NC_025978.4 (2603352..2607069)

Chromosome 11 - NC_047579.1Genomic Context describing neighboring genes Neighboring gene C-type lectin domain containing 16A Neighboring gene Dexi homolog (mouse) Neighboring gene protein kinase C, beta b Neighboring gene uncharacterized LOC117595236 Neighboring gene calcium channel, voltage-dependent, gamma subunit 3b

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 1-phosphatidylinositol-3-kinase regulator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in intracellular signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in phosphatidylinositol phosphate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of phosphatidylinositol 3-kinase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
suppressor of cytokine signaling 1a

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Esox lucius Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fEsoLuc1.pri Primary Assembly

Genomic

  1. NC_047579.1 Reference fEsoLuc1.pri Primary Assembly

    Range
    52746537..52750276 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010865943.5 → XP_010864245.3  suppressor of cytokine signaling 1a

    UniProtKB/TrEMBL
    A0A3P8YCT7
    Conserved Domains (2) summary
    cd10382
    Location:94 → 191
    SH2_SOCS1; Src homology 2 (SH2) domain found in suppressor of cytokine signaling (SOCS) proteins
    cl02533
    Location:199 → 238
    SOCS; SOCS (suppressors of cytokine signaling) box. The SOCS box is found in the C-terminal region of CIS/SOCS family proteins (in combination with a SH2 domain), ASBs (ankyrin repeat-containing proteins with a SOCS box), SSBs (SPRY domain-containing proteins ...

  2. XM_010865942.5 → XP_010864244.3  suppressor of cytokine signaling 1a

    UniProtKB/TrEMBL
    A0A3P8YCT7
    Related
    ENSELUP00000082280.1, ENSELUT00000093828.1
    Conserved Domains (2) summary
    cd10382
    Location:94 → 191
    SH2_SOCS1; Src homology 2 (SH2) domain found in suppressor of cytokine signaling (SOCS) proteins
    cl02533
    Location:199 → 238
    SOCS; SOCS (suppressors of cytokine signaling) box. The SOCS box is found in the C-terminal region of CIS/SOCS family proteins (in combination with a SH2 domain), ASBs (ankyrin repeat-containing proteins with a SOCS box), SSBs (SPRY domain-containing proteins ...
Nucleotide Protein
Heading Accession and Version

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