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cacna1da calcium channel, voltage-dependent, L type, alpha 1D subunit, a [ Esox lucius (northern pike) ]

Gene ID: 105006991, updated on 18-Jun-2024

Summary

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Gene symbol
cacna1da
Gene description
calcium channel, voltage-dependent, L type, alpha 1D subunit, a
See related
Ensembl:ENSELUG00000008321
Gene type
protein coding
RefSeq status
MODEL
Organism
Esox lucius
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Esociformes; Esocidae; Esox
Orthologs
zebrafish all
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Genomic context

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See cacna1da in Genome Data Viewer
Location:
chromosome: 17
Exon count:
51
Annotation release Status Assembly Chr Location
104 current fEsoLuc1.pri (GCF_011004845.1) 17 NC_047585.1 (37238954..37342046, complement)
103 previous assembly Eluc_v4 (GCF_004634155.1) Linkage Group LG17 NC_025984.4 (11371147..11472532)

Chromosome 17 - NC_047585.1Genomic Context describing neighboring genes Neighboring gene calcium channel, voltage dependent, alpha2/delta subunit 3 Neighboring gene parapinopsin Neighboring gene transketolase Neighboring gene uncharacterized LOC114828892

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome and linkage map of the northern pike (Esox lucius): conserved synteny revealed between the salmonid sister group and the Neoteleostei. Rondeau EB, et al. PLoS One, 2014. PMID 25069045, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables high voltage-gated calcium channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in calcium ion import across plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of voltage-gated calcium channel complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
calcium channel, voltage-dependent, L type, alpha 1D subunit, a
Names
voltage-dependent L-type calcium channel subunit alpha-1D

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Esox lucius Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fEsoLuc1.pri Primary Assembly

Genomic

  1. NC_047585.1 Reference fEsoLuc1.pri Primary Assembly

    Range
    37238954..37342046 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034287405.1 → XP_034143296.1  calcium channel, voltage-dependent, L type, alpha 1D subunit, a isoform X11

    UniProtKB/TrEMBL
    A0A6Q2XWJ3
    Conserved Domains (4) summary
    pfam00520
    Location:1162 → 1430
    Ion_trans; Ion transport protein
    pfam08763
    Location:1503 → 1574
    Ca_chan_IQ; Voltage gated calcium channel IQ domain
    pfam16885
    Location:1691 → 2086
    CAC1F_C; Voltage-gated calcium channel subunit alpha, C-term
    pfam16905
    Location:1439 → 1492
    GPHH; Voltage-dependent L-type calcium channel, IQ-associated

  2. XM_029114022.2 → XP_028969855.1  calcium channel, voltage-dependent, L type, alpha 1D subunit, a isoform X14

    UniProtKB/TrEMBL
    A0A6Q2XWJ3
    Related
    ENSELUP00000051573.2, ENSELUT00000058530.2
    Conserved Domains (4) summary
    pfam16885
    Location:1558 → 2086
    CAC1F_C; Voltage-gated calcium channel subunit alpha, C-term
    pfam00520
    Location:1136 → 1389
    Ion_trans; Ion transport protein
    pfam08763
    Location:1462 → 1533
    Ca_chan_IQ; Voltage gated calcium channel IQ domain
    pfam16905
    Location:1390 → 1460
    GPHH; Voltage-dependent L-type calcium channel, IQ-associated

  3. XM_029114020.2 → XP_028969853.1  calcium channel, voltage-dependent, L type, alpha 1D subunit, a isoform X12

    UniProtKB/TrEMBL
    A0A6Q2XWJ3
    Related
    ENSELUP00000057435.2, ENSELUT00000075487.2
    Conserved Domains (4) summary
    pfam16885
    Location:1569 → 2097
    CAC1F_C; Voltage-gated calcium channel subunit alpha, C-term
    pfam00520
    Location:1136 → 1400
    Ion_trans; Ion transport protein
    pfam08763
    Location:1473 → 1544
    Ca_chan_IQ; Voltage gated calcium channel IQ domain
    pfam16905
    Location:1401 → 1471
    GPHH; Voltage-dependent L-type calcium channel, IQ-associated

  4. XM_029114021.2 → XP_028969854.1  calcium channel, voltage-dependent, L type, alpha 1D subunit, a isoform X13

    UniProtKB/TrEMBL
    A0A6Q2XWJ3
    Conserved Domains (4) summary
    pfam16885
    Location:1558 → 2086
    CAC1F_C; Voltage-gated calcium channel subunit alpha, C-term
    pfam00520
    Location:1136 → 1389
    Ion_trans; Ion transport protein
    pfam08763
    Location:1462 → 1533
    Ca_chan_IQ; Voltage gated calcium channel IQ domain
    pfam16905
    Location:1390 → 1460
    GPHH; Voltage-dependent L-type calcium channel, IQ-associated

  5. XM_034287404.1 → XP_034143295.1  calcium channel, voltage-dependent, L type, alpha 1D subunit, a isoform X10

    UniProtKB/TrEMBL
    A0A6Q2XWJ3
    Conserved Domains (4) summary
    pfam00520
    Location:1136 → 1404
    Ion_trans; Ion transport protein
    pfam08763
    Location:1477 → 1548
    Ca_chan_IQ; Voltage gated calcium channel IQ domain
    pfam16885
    Location:1572 → 2099
    CAC1F_C; Voltage-gated calcium channel subunit alpha, C-term
    pfam16905
    Location:1413 → 1466
    GPHH; Voltage-dependent L-type calcium channel, IQ-associated

  6. XM_029114023.2 → XP_028969856.1  calcium channel, voltage-dependent, L type, alpha 1D subunit, a isoform X6

    UniProtKB/TrEMBL
    A0A6Q2YEI6
    Conserved Domains (4) summary
    pfam16885
    Location:1590 → 2118
    CAC1F_C; Voltage-gated calcium channel subunit alpha, C-term
    pfam00520
    Location:1153 → 1421
    Ion_trans; Ion transport protein
    pfam08763
    Location:1494 → 1565
    Ca_chan_IQ; Voltage gated calcium channel IQ domain
    pfam16905
    Location:1422 → 1492
    GPHH; Voltage-dependent L-type calcium channel, IQ-associated

  7. XM_029114017.2 → XP_028969850.1  calcium channel, voltage-dependent, L type, alpha 1D subunit, a isoform X9

    UniProtKB/TrEMBL
    A0A6Q2XWJ3
    Related
    ENSELUP00000063988.2, ENSELUT00000069506.2
    Conserved Domains (4) summary
    pfam16885
    Location:1584 → 2112
    CAC1F_C; Voltage-gated calcium channel subunit alpha, C-term
    pfam00520
    Location:1162 → 1415
    Ion_trans; Ion transport protein
    pfam08763
    Location:1488 → 1559
    Ca_chan_IQ; Voltage gated calcium channel IQ domain
    pfam16905
    Location:1416 → 1486
    GPHH; Voltage-dependent L-type calcium channel, IQ-associated

  8. XM_029114014.2 → XP_028969847.1  calcium channel, voltage-dependent, L type, alpha 1D subunit, a isoform X5

    UniProtKB/TrEMBL
    A0A6Q2XWJ3
    Conserved Domains (4) summary
    pfam16885
    Location:1595 → 2123
    CAC1F_C; Voltage-gated calcium channel subunit alpha, C-term
    pfam00520
    Location:1162 → 1426
    Ion_trans; Ion transport protein
    pfam08763
    Location:1499 → 1570
    Ca_chan_IQ; Voltage gated calcium channel IQ domain
    pfam16905
    Location:1427 → 1497
    GPHH; Voltage-dependent L-type calcium channel, IQ-associated

  9. XM_029114013.2 → XP_028969846.1  calcium channel, voltage-dependent, L type, alpha 1D subunit, a isoform X2

    UniProtKB/TrEMBL
    A0A6Q2XWJ3
    Conserved Domains (4) summary
    pfam16885
    Location:1599 → 2127
    CAC1F_C; Voltage-gated calcium channel subunit alpha, C-term
    pfam00520
    Location:1162 → 1430
    Ion_trans; Ion transport protein
    pfam08763
    Location:1503 → 1574
    Ca_chan_IQ; Voltage gated calcium channel IQ domain
    pfam16905
    Location:1431 → 1501
    GPHH; Voltage-dependent L-type calcium channel, IQ-associated

  10. XM_029114016.2 → XP_028969849.1  calcium channel, voltage-dependent, L type, alpha 1D subunit, a isoform X8

    UniProtKB/TrEMBL
    A0A6Q2XWJ3
    Related
    ENSELUP00000063541.2, ENSELUT00000073944.2
    Conserved Domains (4) summary
    pfam16885
    Location:1584 → 2112
    CAC1F_C; Voltage-gated calcium channel subunit alpha, C-term
    pfam00520
    Location:1162 → 1415
    Ion_trans; Ion transport protein
    pfam08763
    Location:1488 → 1559
    Ca_chan_IQ; Voltage gated calcium channel IQ domain
    pfam16905
    Location:1416 → 1486
    GPHH; Voltage-dependent L-type calcium channel, IQ-associated

  11. XM_034287402.1 → XP_034143293.1  calcium channel, voltage-dependent, L type, alpha 1D subunit, a isoform X4

    UniProtKB/TrEMBL
    A0A6Q2XWJ3
    Conserved Domains (4) summary
    pfam00520
    Location:1162 → 1426
    Ion_trans; Ion transport protein
    pfam08763
    Location:1499 → 1570
    Ca_chan_IQ; Voltage gated calcium channel IQ domain
    pfam16885
    Location:1594 → 2121
    CAC1F_C; Voltage-gated calcium channel subunit alpha, C-term
    pfam16905
    Location:1435 → 1488
    GPHH; Voltage-dependent L-type calcium channel, IQ-associated

  12. XM_034287403.1 → XP_034143294.1  calcium channel, voltage-dependent, L type, alpha 1D subunit, a isoform X7

    UniProtKB/TrEMBL
    A0A6Q2YEI6
    Conserved Domains (4) summary
    pfam00520
    Location:1162 → 1430
    Ion_trans; Ion transport protein
    pfam08763
    Location:1503 → 1574
    Ca_chan_IQ; Voltage gated calcium channel IQ domain
    pfam16885
    Location:1598 → 2116
    CAC1F_C; Voltage-gated calcium channel subunit alpha, C-term
    pfam16905
    Location:1439 → 1492
    GPHH; Voltage-dependent L-type calcium channel, IQ-associated

  13. XM_034287401.1 → XP_034143292.1  calcium channel, voltage-dependent, L type, alpha 1D subunit, a isoform X3

    UniProtKB/TrEMBL
    A0A6Q2XWJ3
    Conserved Domains (4) summary
    pfam00520
    Location:1162 → 1430
    Ion_trans; Ion transport protein
    pfam08763
    Location:1503 → 1574
    Ca_chan_IQ; Voltage gated calcium channel IQ domain
    pfam16885
    Location:1598 → 2124
    CAC1F_C; Voltage-gated calcium channel subunit alpha, C-term
    pfam16905
    Location:1439 → 1492
    GPHH; Voltage-dependent L-type calcium channel, IQ-associated

  14. XM_029114012.2 → XP_028969845.1  calcium channel, voltage-dependent, L type, alpha 1D subunit, a isoform X1

    UniProtKB/TrEMBL
    A0A6Q2XWJ3
    Conserved Domains (4) summary
    pfam16885
    Location:1599 → 2127
    CAC1F_C; Voltage-gated calcium channel subunit alpha, C-term
    pfam00520
    Location:1162 → 1430
    Ion_trans; Ion transport protein
    pfam08763
    Location:1503 → 1574
    Ca_chan_IQ; Voltage gated calcium channel IQ domain
    pfam16905
    Location:1431 → 1501
    GPHH; Voltage-dependent L-type calcium channel, IQ-associated

RNA

  1. XR_004574656.1 RNA Sequence

Nucleotide Protein
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