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rab30 RAB30, member RAS oncogene family [ Esox lucius (northern pike) ]

Gene ID: 105006589, updated on 18-Jun-2024

Summary

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Gene symbol
rab30
Gene description
RAB30, member RAS oncogene family
See related
Ensembl:ENSELUG00000022997
Gene type
protein coding
RefSeq status
MODEL
Organism
Esox lucius
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Esociformes; Esocidae; Esox
Orthologs
human zebrafish all
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Genomic context

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See rab30 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
7
Annotation release Status Assembly Chr Location
104 current fEsoLuc1.pri (GCF_011004845.1) 1 NC_047569.1 (40611329..40619945)
103 previous assembly Eluc_v4 (GCF_004634155.1) Linkage Group LG01 NC_025968.4 (2733235..2741996, complement)

Chromosome 1 - NC_047569.1Genomic Context describing neighboring genes Neighboring gene thyroid hormone responsive Neighboring gene NADH:ubiquinone oxidoreductase subunit C2 Neighboring gene prolylcarboxypeptidase (angiotensinase C) Neighboring gene protein FAM181B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome and linkage map of the northern pike (Esox lucius): conserved synteny revealed between the salmonid sister group and the Neoteleostei. Rondeau EB, et al. PLoS One, 2014. PMID 25069045, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables GTP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables GTPase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in Rab protein signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in trans-Golgi network IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ras-related protein Rab-30

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Esox lucius Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fEsoLuc1.pri Primary Assembly

Genomic

  1. NC_047569.1 Reference fEsoLuc1.pri Primary Assembly

    Range
    40611329..40619945
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020045975.2 → XP_019901534.1  ras-related protein Rab-30 isoform X1

    Related
    ENSELUP00000041931.2, ENSELUT00000035534.3
    Conserved Domains (1) summary
    cd04114
    Location:18 → 186
    Rab30; Rab GTPase family 30 (Rab30)

  2. XM_020046029.2 → XP_019901588.1  ras-related protein Rab-30 isoform X2

    UniProtKB/TrEMBL
    A0A3P8Z5T6
    Conserved Domains (1) summary
    cd04114
    Location:1 → 169
    Rab30; Rab GTPase family 30 (Rab30)

  3. XM_010865207.4 → XP_010863509.1  ras-related protein Rab-30 isoform X2

    See identical proteins and their annotated locations for XP_010863509.1

    UniProtKB/TrEMBL
    A0A3P8Z5T6
    Conserved Domains (1) summary
    cd04114
    Location:1 → 169
    Rab30; Rab GTPase family 30 (Rab30)
Nucleotide Protein
Heading Accession and Version

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