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NFYA nuclear transcription factor Y subunit alpha [ Bison bison bison ]

Gene ID: 105005259, updated on 13-Mar-2024

Summary

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Gene symbol
NFYA
Gene description
nuclear transcription factor Y subunit alpha
See related
Ensembl:ENSBBBG00000017277
Gene type
protein coding
RefSeq status
MODEL
Organism
Bison bison bison (sub-species: bison)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bison
Orthologs
human mouse all
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Genomic context

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See NFYA in Genome Data Viewer
Location:
chromosome: Un
Exon count:
13
Annotation release Status Assembly Chr Location
100 current Bison_UMD1.0 (GCF_000754665.1) Unplaced Scaffold NW_011495047.1 (9833726..9857915, complement)

NW_011495047.1Genomic Context describing neighboring genes Neighboring gene triggering receptor expressed on myeloid cells like 1 Neighboring gene adenylate cyclase type 10-like Neighboring gene O-acyl-ADP-ribose deacylase 1 Neighboring gene apolipoprotein B mRNA editing enzyme catalytic subunit 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_011495047.1 Unplaced Scaffold Reference Bison_UMD1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of CCAAT-binding factor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nuclear transcription factor Y subunit alpha

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Bison bison bison Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Bison_UMD1.0 Primary Assembly

Genomic

  1. NW_011495047.1 Reference Bison_UMD1.0 Primary Assembly

    Range
    9833726..9857915 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010863208.1 → XP_010861510.1  nuclear transcription factor Y subunit alpha isoform X5

    See identical proteins and their annotated locations for XP_010861510.1

    UniProtKB/TrEMBL
    A0A6P3JDQ9
    Conserved Domains (1) summary
    pfam02045
    Location:228 → 283
    CBFB_NFYA; CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B

  2. XM_010863200.1 → XP_010861502.1  nuclear transcription factor Y subunit alpha isoform X1

    See identical proteins and their annotated locations for XP_010861502.1

    UniProtKB/TrEMBL
    A0A6P3JA47
    Conserved Domains (1) summary
    pfam02045
    Location:263 → 318
    CBFB_NFYA; CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B

  3. XM_010863206.1 → XP_010861508.1  nuclear transcription factor Y subunit alpha isoform X3

    See identical proteins and their annotated locations for XP_010861508.1

    UniProtKB/TrEMBL
    A0A6P3J4T2
    Conserved Domains (1) summary
    pfam02045
    Location:257 → 312
    CBFB_NFYA; CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B

  4. XM_010863205.1 → XP_010861507.1  nuclear transcription factor Y subunit alpha isoform X2

    See identical proteins and their annotated locations for XP_010861507.1

    UniProtKB/TrEMBL
    A0A6P3JBN9
    Conserved Domains (1) summary
    pfam02045
    Location:262 → 317
    CBFB_NFYA; CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B

  5. XM_010863207.1 → XP_010861509.1  nuclear transcription factor Y subunit alpha isoform X4

    See identical proteins and their annotated locations for XP_010861509.1

    UniProtKB/TrEMBL
    A0A6P3JA53
    Related
    ENSBBBP00000022982.1, ENSBBBT00000017193.1
    Conserved Domains (1) summary
    pfam02045
    Location:234 → 289
    CBFB_NFYA; CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B

  6. XM_010863203.1 → XP_010861505.1  nuclear transcription factor Y subunit alpha isoform X1

    See identical proteins and their annotated locations for XP_010861505.1

    UniProtKB/TrEMBL
    A0A6P3JA47
    Conserved Domains (1) summary
    pfam02045
    Location:263 → 318
    CBFB_NFYA; CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B

  7. XM_010863202.1 → XP_010861504.1  nuclear transcription factor Y subunit alpha isoform X1

    See identical proteins and their annotated locations for XP_010861504.1

    UniProtKB/TrEMBL
    A0A6P3JA47
    Conserved Domains (1) summary
    pfam02045
    Location:263 → 318
    CBFB_NFYA; CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B

  8. XM_010863204.1 → XP_010861506.1  nuclear transcription factor Y subunit alpha isoform X1

    See identical proteins and their annotated locations for XP_010861506.1

    UniProtKB/TrEMBL
    A0A6P3JA47
    Related
    ENSBBBP00000023002.1, ENSBBBT00000017192.1
    Conserved Domains (1) summary
    pfam02045
    Location:263 → 318
    CBFB_NFYA; CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B
Nucleotide Protein
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