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CLEC5A C-type lectin domain containing 5A [ Bison bison bison ]

Gene ID: 104999394, updated on 12-Mar-2024

Summary

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Gene symbol
CLEC5A
Gene description
C-type lectin domain containing 5A
See related
Ensembl:ENSBBBG00000001296
Gene type
protein coding
RefSeq status
MODEL
Organism
Bison bison bison (sub-species: bison)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bison
Orthologs
human mouse all
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Genomic context

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See CLEC5A in Genome Data Viewer
Location:
chromosome: Un
Exon count:
7
Annotation release Status Assembly Chr Location
100 current Bison_UMD1.0 (GCF_000754665.1) Unplaced Scaffold NW_011494924.1 (5782319..5794880, complement)

NW_011494924.1Genomic Context describing neighboring genes Neighboring gene olfactory receptor 9A4-like Neighboring gene olfactory receptor 9A4-like Neighboring gene taste 2 receptor member 38 Neighboring gene maltase-glucoamylase

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_011494924.1 Unplaced Scaffold Reference Bison_UMD1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables virus receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in innate immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
C-type lectin domain family 5 member A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Bison bison bison Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Bison_UMD1.0 Primary Assembly

Genomic

  1. NW_011494924.1 Reference Bison_UMD1.0 Primary Assembly

    Range
    5782319..5794880 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010854979.1 → XP_010853281.1  C-type lectin domain family 5 member A isoform X7

    UniProtKB/TrEMBL
    A0A6P3IFP9
    Conserved Domains (1) summary
    cd03593
    Location:28 → 106
    CLECT_NK_receptors_like; C-type lectin-like domain (CTLD) of the type found in natural killer cell receptors (NKRs)

  2. XM_010854978.1 → XP_010853280.1  C-type lectin domain family 5 member A isoform X6

    UniProtKB/TrEMBL
    A0A6P3IQ65
    Conserved Domains (1) summary
    cl02432
    Location:46 → 107
    CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain

  3. XM_010854976.1 → XP_010853278.1  C-type lectin domain family 5 member A isoform X4

    UniProtKB/TrEMBL
    A0A6P3IFS3
    Conserved Domains (1) summary
    cd03593
    Location:48 → 126
    CLECT_NK_receptors_like; C-type lectin-like domain (CTLD) of the type found in natural killer cell receptors (NKRs)

  4. XM_010854977.1 → XP_010853279.1  C-type lectin domain family 5 member A isoform X5

    See identical proteins and their annotated locations for XP_010853279.1

    UniProtKB/TrEMBL
    A0A6P3IMK7
    Conserved Domains (1) summary
    cd03593
    Location:48 → 162
    CLECT_NK_receptors_like; C-type lectin-like domain (CTLD) of the type found in natural killer cell receptors (NKRs)

  5. XM_010854975.1 → XP_010853277.1  C-type lectin domain family 5 member A isoform X3

    UniProtKB/TrEMBL
    A0A6P3IN73
    Conserved Domains (1) summary
    cl02432
    Location:66 → 127
    CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain

  6. XM_010854973.1 → XP_010853275.1  C-type lectin domain family 5 member A isoform X1

    UniProtKB/TrEMBL
    A0A6P3IQ61
    Conserved Domains (1) summary
    cd03593
    Location:68 → 146
    CLECT_NK_receptors_like; C-type lectin-like domain (CTLD) of the type found in natural killer cell receptors (NKRs)

  7. XM_010854974.1 → XP_010853276.1  C-type lectin domain family 5 member A isoform X2

    See identical proteins and their annotated locations for XP_010853276.1

    UniProtKB/TrEMBL
    A0A6P3IFP4
    Related
    ENSBBBP00000021682.1, ENSBBBT00000002919.1
    Conserved Domains (1) summary
    cd03593
    Location:68 → 182
    CLECT_NK_receptors_like; C-type lectin-like domain (CTLD) of the type found in natural killer cell receptors (NKRs)
Nucleotide Protein
Heading Accession and Version

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