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MDGA2 MAM domain containing glycosylphosphatidylinositol anchor 2 [ Bison bison bison ]

Gene ID: 104994480, updated on 12-Mar-2024

Summary

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Gene symbol
MDGA2
Gene description
MAM domain containing glycosylphosphatidylinositol anchor 2
See related
Ensembl:ENSBBBG00000013144
Gene type
protein coding
RefSeq status
MODEL
Organism
Bison bison bison (sub-species: bison)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bison
Orthologs
human mouse all
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Genomic context

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See MDGA2 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
17
Annotation release Status Assembly Chr Location
100 current Bison_UMD1.0 (GCF_000754665.1) Unplaced Scaffold NW_011494831.1 (6567637..7102595, complement)

NW_011494831.1Genomic Context describing neighboring genes Neighboring gene 40S ribosomal protein S27 Neighboring gene 60S ribosomal protein L10-like Neighboring gene 14-3-3 protein epsilon pseudogene Neighboring gene thymosin beta-4 pseudogene

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_011494831.1 Unplaced Scaffold Reference Bison_UMD1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in homophilic cell adhesion via plasma membrane adhesion molecules IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
MAM domain-containing glycosylphosphatidylinositol anchor protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Bison bison bison Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Bison_UMD1.0 Primary Assembly

Genomic

  1. NW_011494831.1 Reference Bison_UMD1.0 Primary Assembly

    Range
    6567637..7102595 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010848064.1 → XP_010846366.1  MAM domain-containing glycosylphosphatidylinositol anchor protein 2

    UniProtKB/TrEMBL
    A0A6P3HUX0
    Related
    ENSBBBP00000004184.1, ENSBBBT00000008594.1
    Conserved Domains (6) summary
    cd06263
    Location:725 → 896
    MAM; Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular domain which mediates protein-protein interactions and is found in a diverse set of proteins, many of which are known to function in cell adhesion. Members ...
    cd00096
    Location:332 → 404
    Ig; Immunoglobulin domain
    smart00408
    Location:233 → 294
    IGc2; Immunoglobulin C-2 Type
    smart00410
    Location:25 → 105
    IG_like; Immunoglobulin like
    pfam00629
    Location:725 → 898
    MAM; MAM domain, meprin/A5/mu
    pfam13895
    Location:520 → 595
    Ig_2; Immunoglobulin domain
Nucleotide Protein
Heading Accession and Version

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