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MAN2C1 mannosidase alpha class 2C member 1 [ Bison bison bison ]

Gene ID: 104990974, updated on 12-Mar-2024

Summary

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Gene symbol
MAN2C1
Gene description
mannosidase alpha class 2C member 1
See related
Ensembl:ENSBBBG00000001732
Gene type
protein coding
RefSeq status
MODEL
Organism
Bison bison bison (sub-species: bison)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bison
Orthologs
human mouse all
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Genomic context

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See MAN2C1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
26
Annotation release Status Assembly Chr Location
100 current Bison_UMD1.0 (GCF_000754665.1) Unplaced Scaffold NW_011494753.1 (8264872..8277160)

NW_011494753.1Genomic Context describing neighboring genes Neighboring gene protein tyrosine phosphatase non-receptor type 9 Neighboring gene SIN3 transcription regulator family member A Neighboring gene nei like DNA glycosylase 1 Neighboring gene COMM domain containing 4

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_011494753.1 Unplaced Scaffold Reference Bison_UMD1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-mannosidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables carbohydrate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mannose metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in oligosaccharide catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: alpha-mannosidase 2C1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Bison bison bison Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Bison_UMD1.0 Primary Assembly

Genomic

  1. NW_011494753.1 Reference Bison_UMD1.0 Primary Assembly

    Range
    8264872..8277160
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010843326.1 → XP_010841628.1  LOW QUALITY PROTEIN: alpha-mannosidase 2C1

    UniProtKB/TrEMBL
    A0A6P3HFA8
    Related
    ENSBBBP00000017650.1, ENSBBBT00000014535.1
    Conserved Domains (5) summary
    cd10813
    Location:252 → 501
    GH38N_AMII_Man2C1; N-terminal catalytic domain of mammalian cytosolic alpha-mannosidase Man2C1 and similar proteins; glycoside hydrolase family 38 (GH38)
    smart00872
    Location:518 → 596
    Alpha-mann_mid; Alpha mannosidase, middle domain
    COG0383
    Location:68 → 1030
    AMS1; Alpha-mannosidase [Carbohydrate transport and metabolism]
    pfam02837
    Location:60 → 146
    Glyco_hydro_2_N; Glycosyl hydrolases family 2, sugar binding domain
    pfam07748
    Location:622 → 1032
    Glyco_hydro_38C; Glycosyl hydrolases family 38 C-terminal domain
Nucleotide Protein
Heading Accession and Version

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