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XYLT1 xylosyltransferase 1 [ Bison bison bison ]

Gene ID: 104986722, updated on 12-Mar-2024

Summary

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Gene symbol
XYLT1
Gene description
xylosyltransferase 1
See related
Ensembl:ENSBBBG00000022906
Gene type
protein coding
RefSeq status
MODEL
Organism
Bison bison bison (sub-species: bison)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bison
Annotation information
Annotation category: partial on reference assembly
Orthologs
human mouse all
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Genomic context

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See XYLT1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
100 current Bison_UMD1.0 (GCF_000754665.1) Unplaced Scaffold NW_011494644.1 (934710..1284309)

NW_011494644.1Genomic Context describing neighboring genes Neighboring gene plexin-A1 pseudogene Neighboring gene 40S ribosomal protein S20 pseudogene Neighboring gene C-type lectin domain containing 19A Neighboring gene synaptotagmin 17

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_011494644.1 Unplaced Scaffold Reference Bison_UMD1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein xylosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chondroitin sulfate proteoglycan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heparan sulfate proteoglycan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
xylosyltransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Bison bison bison Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Bison_UMD1.0 Primary Assembly

Genomic

  1. NW_011494644.1 Reference Bison_UMD1.0 Primary Assembly

    Range
    934710..1284309
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010837407.1 → XP_010835709.1  xylosyltransferase 1

    UniProtKB/TrEMBL
    A0A6P3H9D5
    Related
    ENSBBBP00000015109.1, ENSBBBT00000032473.1
    Conserved Domains (2) summary
    pfam02485
    Location:229 → 481
    Branch; Core-2/I-Branching enzyme
    pfam12529
    Location:514 → 694
    Xylo_C; Xylosyltransferase C terminal
Nucleotide Protein
Heading Accession and Version

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