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NCAM1 neural cell adhesion molecule 1 [ Bison bison bison ]

Gene ID: 104981319, updated on 12-Mar-2024

Summary

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Gene symbol
NCAM1
Gene description
neural cell adhesion molecule 1
See related
Ensembl:ENSBBBG00000011422
Gene type
protein coding
RefSeq status
MODEL
Organism
Bison bison bison (sub-species: bison)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bison
Orthologs
human mouse all
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Genomic context

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See NCAM1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
25
Annotation release Status Assembly Chr Location
100 current Bison_UMD1.0 (GCF_000754665.1) Unplaced Scaffold NW_011495071.1 (2199840..2566444)

NW_011495071.1Genomic Context describing neighboring genes Neighboring gene placenta-expressed transcript 1 protein Neighboring gene 6-pyruvoyltetrahydropterin synthase Neighboring gene tetratricopeptide repeat domain 12 Neighboring gene ankyrin repeat and kinase domain containing 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_011495071.1 Unplaced Scaffold Reference Bison_UMD1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
neural cell adhesion molecule 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Bison bison bison Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Bison_UMD1.0 Primary Assembly

Genomic

  1. NW_011495071.1 Reference Bison_UMD1.0 Primary Assembly

    Range
    2199840..2566444
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010830346.1 → XP_010828648.1  neural cell adhesion molecule 1 isoform X10

    See identical proteins and their annotated locations for XP_010828648.1

    UniProtKB/TrEMBL
    A0A6P3GAK7
    Related
    ENSBBBP00000002140.1, ENSBBBT00000012435.1
    Conserved Domains (9) summary
    pfam05887
    Location:765 → 845
    Trypan_PARP; Procyclic acidic repetitive protein (PARP)
    cd05865
    Location:20 → 115
    Ig1_NCAM-1; First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1
    cd05869
    Location:305 → 411
    Ig5_NCAM-1; Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)
    smart00408
    Location:427 → 495
    IGc2; Immunoglobulin C-2 Type
    smart00410
    Location:420 → 498
    IG_like; Immunoglobulin like
    cd00063
    Location:507 → 604
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam07679
    Location:218 → 303
    I-set; Immunoglobulin I-set domain
    pfam00041
    Location:612 → 693
    fn3; Fibronectin type III domain
    cl11960
    Location:211 → 306
    Ig; Immunoglobulin domain

  2. XM_010830336.1 → XP_010828638.1  neural cell adhesion molecule 1 isoform X1

    UniProtKB/TrEMBL
    A0A6P3GAJ4
    Conserved Domains (9) summary
    pfam05887
    Location:791 → 871
    Trypan_PARP; Procyclic acidic repetitive protein (PARP)
    cd05865
    Location:20 → 115
    Ig1_NCAM-1; First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1
    cd05869
    Location:305 → 401
    Ig5_NCAM-1; Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)
    smart00408
    Location:417 → 485
    IGc2; Immunoglobulin C-2 Type
    smart00410
    Location:410 → 488
    IG_like; Immunoglobulin like
    cd00063
    Location:497 → 594
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam07679
    Location:218 → 303
    I-set; Immunoglobulin I-set domain
    pfam00041
    Location:637 → 719
    fn3; Fibronectin type III domain
    cl11960
    Location:211 → 306
    Ig; Immunoglobulin domain

  3. XM_010830338.1 → XP_010828640.1  neural cell adhesion molecule 1 isoform X2

    UniProtKB/TrEMBL
    A0A6P3GQ96
    Conserved Domains (9) summary
    pfam05887
    Location:790 → 870
    Trypan_PARP; Procyclic acidic repetitive protein (PARP)
    cd05865
    Location:20 → 115
    Ig1_NCAM-1; First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1
    cd05869
    Location:305 → 401
    Ig5_NCAM-1; Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)
    smart00408
    Location:417 → 485
    IGc2; Immunoglobulin C-2 Type
    smart00410
    Location:410 → 488
    IG_like; Immunoglobulin like
    cd00063
    Location:497 → 594
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam07679
    Location:218 → 303
    I-set; Immunoglobulin I-set domain
    pfam00041
    Location:636 → 718
    fn3; Fibronectin type III domain
    cl11960
    Location:211 → 306
    Ig; Immunoglobulin domain

  4. XM_010830339.1 → XP_010828641.1  neural cell adhesion molecule 1 isoform X3

    UniProtKB/TrEMBL
    A0A6P3GGE0
    Conserved Domains (8) summary
    cd05865
    Location:20 → 115
    Ig1_NCAM-1; First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1
    cd05869
    Location:305 → 401
    Ig_NCAM-1; Immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)
    smart00410
    Location:124 → 190
    IG_like; Immunoglobulin like
    cd00063
    Location:497 → 594
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam00041
    Location:602 → 684
    fn3; Fibronectin type III domain
    pfam13927
    Location:410 → 482
    Ig_3; Immunoglobulin domain
    cl11960
    Location:211 → 306
    Ig; Immunoglobulin domain
    cl25865
    Location:756 → 836
    Trypan_PARP; Procyclic acidic repetitive protein (PARP)

  5. XM_010830340.1 → XP_010828642.1  neural cell adhesion molecule 1 isoform X4

    UniProtKB/TrEMBL
    A0A6P3GPP0
    Conserved Domains (8) summary
    cd05865
    Location:20 → 115
    Ig1_NCAM-1; First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1
    cd05869
    Location:305 → 401
    Ig_NCAM-1; Immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)
    smart00410
    Location:124 → 190
    IG_like; Immunoglobulin like
    cd00063
    Location:497 → 594
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam00041
    Location:601 → 683
    fn3; Fibronectin type III domain
    pfam13927
    Location:410 → 482
    Ig_3; Immunoglobulin domain
    cl11960
    Location:211 → 306
    Ig; Immunoglobulin domain
    cl25865
    Location:755 → 835
    Trypan_PARP; Procyclic acidic repetitive protein (PARP)

  6. XM_010830341.1 → XP_010828643.1  neural cell adhesion molecule 1 isoform X5

    See identical proteins and their annotated locations for XP_010828643.1

    UniProtKB/TrEMBL
    A0A6P3GAK1
    Related
    ENSBBBP00000002137.1, ENSBBBT00000012438.1
    Conserved Domains (9) summary
    pfam05887
    Location:754 → 834
    Trypan_PARP; Procyclic acidic repetitive protein (PARP)
    cd05865
    Location:20 → 115
    Ig1_NCAM-1; First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1
    cd05869
    Location:305 → 401
    Ig5_NCAM-1; Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)
    smart00408
    Location:417 → 485
    IGc2; Immunoglobulin C-2 Type
    smart00410
    Location:410 → 488
    IG_like; Immunoglobulin like
    cd00063
    Location:497 → 594
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam07679
    Location:218 → 303
    I-set; Immunoglobulin I-set domain
    pfam00041
    Location:601 → 682
    fn3; Fibronectin type III domain
    cl11960
    Location:211 → 306
    Ig; Immunoglobulin domain

  7. XM_010830342.1 → XP_010828644.1  neural cell adhesion molecule 1 isoform X6

    UniProtKB/TrEMBL
    A0A6P3GP93
    Related
    ENSBBBP00000018387.1, ENSBBBT00000012451.1
    Conserved Domains (8) summary
    cd05730
    Location:211 → 306
    Ig3_NCAM-1_like; Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)
    cd05865
    Location:20 → 115
    Ig1_NCAM-1; First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1
    cd05869
    Location:305 → 401
    Ig5_NCAM-1; Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)
    smart00408
    Location:417 → 485
    IGc2; Immunoglobulin C-2 Type
    smart00410
    Location:410 → 488
    IG_like; Immunoglobulin like
    cd00063
    Location:497 → 594
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam07679
    Location:218 → 303
    I-set; Immunoglobulin I-set domain
    pfam00041
    Location:637 → 719
    fn3; Fibronectin type III domain

  8. XM_010830343.1 → XP_010828645.1  neural cell adhesion molecule 1 isoform X7

    See identical proteins and their annotated locations for XP_010828645.1

    UniProtKB/TrEMBL
    A0A6P3GQA1
    Conserved Domains (8) summary
    cd05730
    Location:211 → 306
    Ig3_NCAM-1_like; Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)
    cd05865
    Location:20 → 115
    Ig1_NCAM-1; First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1
    cd05869
    Location:305 → 401
    Ig5_NCAM-1; Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)
    smart00408
    Location:417 → 485
    IGc2; Immunoglobulin C-2 Type
    smart00410
    Location:410 → 488
    IG_like; Immunoglobulin like
    cd00063
    Location:497 → 594
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam07679
    Location:218 → 303
    I-set; Immunoglobulin I-set domain
    pfam00041
    Location:602 → 683
    fn3; Fibronectin type III domain

  9. XM_010830344.1 → XP_010828646.1  neural cell adhesion molecule 1 isoform X8

    See identical proteins and their annotated locations for XP_010828646.1

    UniProtKB/TrEMBL
    A0A6P3GGE8
    Conserved Domains (8) summary
    cd05730
    Location:211 → 306
    Ig3_NCAM-1_like; Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)
    cd05865
    Location:20 → 115
    Ig1_NCAM-1; First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1
    cd05869
    Location:305 → 401
    Ig5_NCAM-1; Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)
    smart00408
    Location:417 → 485
    IGc2; Immunoglobulin C-2 Type
    smart00410
    Location:410 → 488
    IG_like; Immunoglobulin like
    cd00063
    Location:497 → 594
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam07679
    Location:218 → 303
    I-set; Immunoglobulin I-set domain
    pfam00041
    Location:601 → 683
    fn3; Fibronectin type III domain

  10. XM_010830345.1 → XP_010828647.1  neural cell adhesion molecule 1 isoform X9

    See identical proteins and their annotated locations for XP_010828647.1

    UniProtKB/TrEMBL
    A0A6P3GPP3
    Related
    ENSBBBP00000018376.1, ENSBBBT00000012457.1
    Conserved Domains (8) summary
    cd05730
    Location:211 → 306
    Ig3_NCAM-1_like; Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)
    cd05865
    Location:20 → 115
    Ig1_NCAM-1; First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1
    cd05869
    Location:305 → 401
    Ig5_NCAM-1; Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)
    smart00408
    Location:417 → 485
    IGc2; Immunoglobulin C-2 Type
    smart00410
    Location:410 → 488
    IG_like; Immunoglobulin like
    cd00063
    Location:497 → 594
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam07679
    Location:218 → 303
    I-set; Immunoglobulin I-set domain
    pfam00041
    Location:601 → 682
    fn3; Fibronectin type III domain
Nucleotide Protein
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