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ZSCAN9 zinc finger and SCAN domain containing 9 [ Bos taurus (cattle) ]

Gene ID: 104975672, updated on 22-Oct-2023

Summary

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Official Symbol
ZSCAN9provided by VGNC
Official Full Name
zinc finger and SCAN domain containing 9provided by VGNC
Primary source
VGNC:VGNC:37380
Gene type
protein coding
RefSeq status
MODEL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
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Genomic context

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See ZSCAN9 in Genome Data Viewer
Location:
chromosome: 23
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 23 NC_037350.1 (30458223..30469669, complement)

Chromosome 23 - NC_037350.1Genomic Context describing neighboring genes Neighboring gene NFKB activating protein like Neighboring gene zinc finger with KRAB and SCAN domains 4 Neighboring gene transfer RNA serine (anticodon GCU) Neighboring gene pre-mRNA-splicing regulator WTAP

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037350.1 Chromosome 23 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: zinc finger and SCAN domain-containing protein 9

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037350.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    30458223..30469669 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015459942.3 → XP_015315428.1  LOW QUALITY PROTEIN: zinc finger and SCAN domain-containing protein 9

    Conserved Domains (5) summary
    smart00431
    Location:48 → 160
    SCAN; leucine rich region
    COG5048
    Location:304 → 440
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:363 → 383
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam02023
    Location:49 → 136
    SCAN; SCAN domain
    pfam13465
    Location:320 → 344
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein
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