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gxylt1 glucoside xylosyltransferase 1 [ Notothenia coriiceps (black rockcod) ]

Gene ID: 104961697, updated on 22-Oct-2023

Summary

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Gene symbol
gxylt1
Gene description
glucoside xylosyltransferase 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Notothenia coriiceps
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Notothenioidei; Nototheniidae; Notothenia
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Genomic context

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See gxylt1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
8
Annotation release Status Assembly Chr Location
100 current NC01 (GCF_000735185.1) Unplaced Scaffold NW_011366394.1 (110505..134532, complement)

NW_011366394.1Genomic Context describing neighboring genes Neighboring gene PDZ domain containing ring finger 4 Neighboring gene zinc finger CCHC-type and RNA binding motif 1 Neighboring gene periphilin 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_011366394.1 Unplaced Scaffold Reference NC01 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables UDP-xylosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in O-glycan processing IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glucoside xylosyltransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Notothenia coriiceps Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NC01 Primary Assembly

Genomic

  1. NW_011366394.1 Reference NC01 Primary Assembly

    Range
    110505..134532 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010790028.1 → XP_010788330.1  glucoside xylosyltransferase 1

    UniProtKB/TrEMBL
    A0A6I9PL56
    Conserved Domains (2) summary
    cd06430
    Location:89 → 391
    GT8_like_2; GT8_like_2 represents a subfamily of GT8 with unknown function
    COG1442
    Location:134 → 320
    RfaJ; Lipopolysaccharide biosynthesis protein, LPS:glycosyltransferase [Cell wall/membrane/envelope biogenesis]

RNA

  1. XR_800127.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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