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pleca plectin a [ Notothenia coriiceps (black rockcod) ]

Gene ID: 104953255, updated on 12-Mar-2024

Summary

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Gene symbol
pleca
Gene description
plectin a
Gene type
protein coding
RefSeq status
MODEL
Organism
Notothenia coriiceps
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Notothenioidei; Nototheniidae; Notothenia
Orthologs
zebrafish all
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Genomic context

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See pleca in Genome Data Viewer
Location:
chromosome: Un
Exon count:
37
Annotation release Status Assembly Chr Location
100 current NC01 (GCF_000735185.1) Unplaced Scaffold NW_011354098.1 (2026..57682, complement)

NW_011354098.1Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_011354098.1 Unplaced Scaffold Reference NC01 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ankyrin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cadherin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of muscle IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in hemidesmosome assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intermediate filament cytoskeleton organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in wound healing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in focal adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in hemidesmosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in intermediate filament IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in perinuclear region of cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
plectin-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Notothenia coriiceps Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NC01 Primary Assembly

Genomic

  1. NW_011354098.1 Reference NC01 Primary Assembly

    Range
    2026..57682 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010780178.1 → XP_010778480.1  plectin-like isoform X6

    UniProtKB/TrEMBL
    A0A6I9NU93
    Conserved Domains (13) summary
    PRK01156
    Location:1042 → 1609
    PRK01156; chromosome segregation protein; Provisional
    smart00150
    Location:526 → 620
    SPEC; Spectrin repeats
    smart00250
    Location:3108 → 3144
    PLEC; Plectin repeat
    cd00014
    Location:19 → 121
    CH; Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity). The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like ...
    cd00176
    Location:621 → 811
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    pfam00307
    Location:136 → 234
    CH; Calponin homology (CH) domain
    pfam00681
    Location:3071 → 3111
    Plectin; Plectin repeat
    pfam01576
    Location:1332 → 2400
    Myosin_tail_1; Myosin tail
    pfam06936
    Location:1627 → 1679
    Selenoprotein_S; Selenoprotein S (SelS)
    pfam08597
    Location:2110 → 2170
    eIF3_subunit; Translation initiation factor eIF3 subunit
    pfam14915
    Location:2277 → 2548
    CCDC144C; CCDC144C protein coiled-coil region
    cl12013
    Location:2475 → 2578
    BAR; The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature
    cl19107
    Location:1456 → 1584
    SPFH_like; core domain of the SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily

  2. XM_010780176.1 → XP_010778478.1  plectin-like isoform X4

    UniProtKB/TrEMBL
    A0A6I9NUD5
    Conserved Domains (13) summary
    PRK01156
    Location:1062 → 1629
    PRK01156; chromosome segregation protein; Provisional
    smart00150
    Location:546 → 640
    SPEC; Spectrin repeats
    smart00250
    Location:3128 → 3164
    PLEC; Plectin repeat
    cd00014
    Location:39 → 141
    CH; Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity). The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like ...
    cd00176
    Location:641 → 831
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    pfam00307
    Location:156 → 254
    CH; Calponin homology (CH) domain
    pfam00681
    Location:3091 → 3131
    Plectin; Plectin repeat
    pfam01576
    Location:1352 → 2420
    Myosin_tail_1; Myosin tail
    pfam06936
    Location:1647 → 1699
    Selenoprotein_S; Selenoprotein S (SelS)
    pfam08597
    Location:2130 → 2190
    eIF3_subunit; Translation initiation factor eIF3 subunit
    pfam14915
    Location:2297 → 2568
    CCDC144C; CCDC144C protein coiled-coil region
    cl12013
    Location:2495 → 2598
    BAR; The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature
    cl19107
    Location:1476 → 1604
    SPFH_like; core domain of the SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily

  3. XM_010780174.1 → XP_010778476.1  plectin-like isoform X2

    UniProtKB/TrEMBL
    A0A6I9NVD7
    Conserved Domains (13) summary
    PRK01156
    Location:1072 → 1639
    PRK01156; chromosome segregation protein; Provisional
    smart00150
    Location:563 → 657
    SPEC; Spectrin repeats
    smart00250
    Location:3138 → 3174
    PLEC; Plectin repeat
    cd00014
    Location:56 → 158
    CH; Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity). The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like ...
    cd00176
    Location:658 → 848
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    pfam00307
    Location:173 → 271
    CH; Calponin homology (CH) domain
    pfam00681
    Location:3101 → 3141
    Plectin; Plectin repeat
    pfam01576
    Location:1362 → 2430
    Myosin_tail_1; Myosin tail
    pfam06936
    Location:1657 → 1709
    Selenoprotein_S; Selenoprotein S (SelS)
    pfam08597
    Location:2140 → 2200
    eIF3_subunit; Translation initiation factor eIF3 subunit
    pfam14915
    Location:2307 → 2578
    CCDC144C; CCDC144C protein coiled-coil region
    cl12013
    Location:2505 → 2608
    BAR; The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature
    cl19107
    Location:1486 → 1614
    SPFH_like; core domain of the SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily

  4. XM_010780173.1 → XP_010778475.1  plectin-like isoform X1

    UniProtKB/TrEMBL
    A0A6I9NU91
    Conserved Domains (13) summary
    PRK01156
    Location:1079 → 1646
    PRK01156; chromosome segregation protein; Provisional
    smart00150
    Location:563 → 657
    SPEC; Spectrin repeats
    smart00250
    Location:3145 → 3181
    PLEC; Plectin repeat
    cd00014
    Location:56 → 158
    CH; Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity). The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like ...
    cd00176
    Location:658 → 848
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    pfam00307
    Location:173 → 271
    CH; Calponin homology (CH) domain
    pfam00681
    Location:3108 → 3148
    Plectin; Plectin repeat
    pfam01576
    Location:1369 → 2437
    Myosin_tail_1; Myosin tail
    pfam06936
    Location:1664 → 1716
    Selenoprotein_S; Selenoprotein S (SelS)
    pfam08597
    Location:2147 → 2207
    eIF3_subunit; Translation initiation factor eIF3 subunit
    pfam14915
    Location:2314 → 2585
    CCDC144C; CCDC144C protein coiled-coil region
    cl12013
    Location:2512 → 2615
    BAR; The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature
    cl19107
    Location:1493 → 1621
    SPFH_like; core domain of the SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily

  5. XM_010780177.1 → XP_010778479.1  plectin-like isoform X5

    UniProtKB/TrEMBL
    A0A6I9NLI3
    Conserved Domains (13) summary
    PRK01156
    Location:1058 → 1625
    PRK01156; chromosome segregation protein; Provisional
    smart00150
    Location:549 → 643
    SPEC; Spectrin repeats
    smart00250
    Location:3124 → 3160
    PLEC; Plectin repeat
    cd00014
    Location:42 → 144
    CH; Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity). The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like ...
    cd00176
    Location:644 → 834
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    pfam00307
    Location:159 → 257
    CH; Calponin homology (CH) domain
    pfam00681
    Location:3087 → 3127
    Plectin; Plectin repeat
    pfam01576
    Location:1348 → 2416
    Myosin_tail_1; Myosin tail
    pfam06936
    Location:1643 → 1695
    Selenoprotein_S; Selenoprotein S (SelS)
    pfam08597
    Location:2126 → 2186
    eIF3_subunit; Translation initiation factor eIF3 subunit
    pfam14915
    Location:2293 → 2564
    CCDC144C; CCDC144C protein coiled-coil region
    cl12013
    Location:2491 → 2594
    BAR; The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature
    cl19107
    Location:1472 → 1600
    SPFH_like; core domain of the SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily

  6. XM_010780175.1 → XP_010778477.1  plectin-like isoform X3

    UniProtKB/TrEMBL
    A0A6I9NQ21
    Conserved Domains (13) summary
    PRK01156
    Location:1065 → 1632
    PRK01156; chromosome segregation protein; Provisional
    smart00150
    Location:549 → 643
    SPEC; Spectrin repeats
    smart00250
    Location:3131 → 3167
    PLEC; Plectin repeat
    cd00014
    Location:42 → 144
    CH; Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity). The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like ...
    cd00176
    Location:644 → 834
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    pfam00307
    Location:159 → 257
    CH; Calponin homology (CH) domain
    pfam00681
    Location:3094 → 3134
    Plectin; Plectin repeat
    pfam01576
    Location:1355 → 2423
    Myosin_tail_1; Myosin tail
    pfam06936
    Location:1650 → 1702
    Selenoprotein_S; Selenoprotein S (SelS)
    pfam08597
    Location:2133 → 2193
    eIF3_subunit; Translation initiation factor eIF3 subunit
    pfam14915
    Location:2300 → 2571
    CCDC144C; CCDC144C protein coiled-coil region
    cl12013
    Location:2498 → 2601
    BAR; The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature
    cl19107
    Location:1479 → 1607
    SPFH_like; core domain of the SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily
Nucleotide Protein
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