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phospho1 phosphoethanolamine/phosphocholine phosphatase 1 [ Notothenia coriiceps (black rockcod) ]

Gene ID: 104949136, updated on 12-Mar-2024

Summary

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Gene symbol
phospho1
Gene description
phosphoethanolamine/phosphocholine phosphatase 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Notothenia coriiceps
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Notothenioidei; Nototheniidae; Notothenia
Orthologs
human zebrafish all
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Genomic context

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See phospho1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
3
Annotation release Status Assembly Chr Location
100 current NC01 (GCF_000735185.1) Unplaced Scaffold NW_011348482.1 (934..3507, complement)

NW_011348482.1Genomic Context describing neighboring genes Neighboring gene zinc finger protein 652 Neighboring gene prohibitin

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_011348482.1 Unplaced Scaffold Reference NC01 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable phosphatase phospho1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Notothenia coriiceps Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NC01 Primary Assembly

Genomic

  1. NW_011348482.1 Reference NC01 Primary Assembly

    Range
    934..3507 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010775418.1 → XP_010773720.1  probable phosphatase phospho1 isoform X1

    UniProtKB/TrEMBL
    A0A6I9NGY6
    Conserved Domains (2) summary
    COG1011
    Location:109 → 310
    YigB; FMN phosphatase YigB, HAD superfamily [Coenzyme transport and metabolism]
    cl21460
    Location:108 → 347
    HAD_like; Haloacid Dehalogenase-like Hydrolases

  2. XM_010775419.1 → XP_010773721.1  probable phosphatase phospho1 isoform X2

    UniProtKB/TrEMBL
    A0A6I9NGQ4
    Conserved Domains (2) summary
    COG1011
    Location:47 → 248
    YigB; FMN phosphatase YigB, HAD superfamily [Coenzyme transport and metabolism]
    cl21460
    Location:46 → 285
    HAD_like; Haloacid Dehalogenase-like Hydrolases
Nucleotide Protein
Heading Accession and Version

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