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c1galt1c1 C1GALT1-specific chaperone 1 [ Notothenia coriiceps (black rockcod) ]

Gene ID: 104941336, updated on 12-Mar-2024

Summary

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Gene symbol
c1galt1c1
Gene description
C1GALT1-specific chaperone 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Notothenia coriiceps
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Notothenioidei; Nototheniidae; Notothenia
Orthologs
human zebrafish all
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Genomic context

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See c1galt1c1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
2
Annotation release Status Assembly Chr Location
100 current NC01 (GCF_000735185.1) Unplaced Scaffold NW_011336016.1 (76034..79142)

NW_011336016.1Genomic Context describing neighboring genes Neighboring gene MCTS1 re-initiation and release factor Neighboring gene chloride intracellular channel 2 Neighboring gene uncharacterized LOC104941338 Neighboring gene uncharacterized LOC104941339

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_011336016.1 Unplaced Scaffold Reference NC01 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in O-glycan processing, core 1 IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
C1GALT1-specific chaperone 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Notothenia coriiceps Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NC01 Primary Assembly

Genomic

  1. NW_011336016.1 Reference NC01 Primary Assembly

    Range
    76034..79142
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010766425.1 → XP_010764727.1  C1GALT1-specific chaperone 1

    UniProtKB/TrEMBL
    A0A6I9MJS0
    Conserved Domains (1) summary
    cl21608
    Location:136 → 232
    Galactosyl_T; Galactosyltransferase
Nucleotide Protein
Heading Accession and Version

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