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capn3a calpain 3a, (p94) [ Larimichthys crocea (large yellow croaker) ]

Gene ID: 104936553, updated on 12-Mar-2024

Summary

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Gene symbol
capn3a
Gene description
calpain 3a, (p94)
Locus tag
EH28_00044
See related
Ensembl:ENSLCRG00005004623
Gene type
protein coding
RefSeq status
MODEL
Organism
Larimichthys crocea
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Sciaenidae; Larimichthys
Also known as
capn3
Orthologs
human zebrafish all
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Genomic context

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See capn3a in Genome Data Viewer
Location:
chromosome: XXIV
Exon count:
21
Annotation release Status Assembly Chr Location
102 current L_crocea_2.0 (GCF_000972845.2) XXIV NC_040034.1 (3624951..3635311)
101 previous assembly L_crocea_1.0 (GCF_000972845.1) Unplaced Scaffold NW_017609651.1 (2173474..2180434)

Chromosome XXIV - NC_040034.1Genomic Context describing neighboring genes Neighboring gene transmembrane protein 87A Neighboring gene glucosidase, alpha; neutral C Neighboring gene zinc finger protein 106a Neighboring gene proton activated chloride channel 1 Neighboring gene neudesin neurotrophic factor Neighboring gene ezrin a

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium-dependent cysteine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of apoptotic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
calpain-3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Larimichthys crocea Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference L_crocea_2.0 Primary Assembly

Genomic

  1. NC_040034.1 Reference L_crocea_2.0 Primary Assembly

    Range
    3624951..3635311
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_027274719.1 → XP_027130520.1  calpain-3

    Related
    ENSLCRP00005018843.1, ENSLCRT00005019230.1
    Conserved Domains (4) summary
    cd15897
    Location:545 → 573
    EFh_PEF; EF-hand motif [structural motif]
    pfam00648
    Location:51 → 351
    Peptidase_C2; Calpain family cysteine protease
    pfam01067
    Location:372 → 515
    Calpain_III; Calpain large subunit, domain III
    cl25352
    Location:545 → 713
    EFh_PEF; The penta-EF hand (PEF) family
Nucleotide Protein
Heading Accession and Version

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