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mgat4a alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A [ Larimichthys crocea (large yellow croaker) ]

Gene ID: 104932326, updated on 12-Mar-2024

Summary

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Gene symbol
mgat4a
Gene description
alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A
Locus tag
EH28_22689
See related
Ensembl:ENSLCRG00005009344
Gene type
protein coding
RefSeq status
MODEL
Organism
Larimichthys crocea
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Sciaenidae; Larimichthys
Orthologs
human zebrafish all
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Genomic context

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See mgat4a in Genome Data Viewer
Location:
chromosome: XVIII
Exon count:
16
Annotation release Status Assembly Chr Location
102 current L_crocea_2.0 (GCF_000972845.2) XVIII NC_040028.1 (20824060..20849141)
101 previous assembly L_crocea_1.0 (GCF_000972845.1) Unplaced Scaffold NW_017608613.1 (1955379..1977867, complement)

Chromosome XVIII - NC_040028.1Genomic Context describing neighboring genes Neighboring gene mitochondrial ribosomal protein L30 Neighboring gene MIT, microtubule interacting and transport, domain containing 1 Neighboring gene cracd like a Neighboring gene cellular repressor of E1A-stimulated genes 2 Neighboring gene cytochrome c oxidase assembly factor 5 Neighboring gene uncharacterized LOC104932327 Neighboring gene leucine-rich repeats and calponin homology (CH) domain containing 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables acetylglucosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein N-linked glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi stack IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum-Golgi intermediate compartment IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A
Names
mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Larimichthys crocea Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference L_crocea_2.0 Primary Assembly

Genomic

  1. NC_040028.1 Reference L_crocea_2.0 Primary Assembly

    Range
    20824060..20849141
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_027291302.1 → XP_027147103.1  alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A

    UniProtKB/TrEMBL
    A0A6G0J5K0
    Related
    ENSLCRP00005025697.1, ENSLCRT00005026167.1
    Conserved Domains (1) summary
    pfam04666
    Location:103 → 380
    Glyco_transf_54; N-Acetylglucosaminyltransferase-IV (GnT-IV) conserved region
Nucleotide Protein
Heading Accession and Version

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