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si:dkey-199f5.8 beta-1,4-galactosyltransferase 3-like [ Larimichthys crocea (large yellow croaker) ]

Gene ID: 104930288, updated on 12-Mar-2024

Summary

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Gene symbol
si:dkey-199f5.8
Gene description
beta-1,4-galactosyltransferase 3-like
See related
Ensembl:ENSLCRG00005010258
Gene type
protein coding
RefSeq status
MODEL
Organism
Larimichthys crocea
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Sciaenidae; Larimichthys
Orthologs
zebrafish all
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Genomic context

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See si:dkey-199f5.8 in Genome Data Viewer
Location:
chromosome: XIII
Exon count:
9
Annotation release Status Assembly Chr Location
102 current L_crocea_2.0 (GCF_000972845.2) XIII NC_040023.1 (31584686..31602390)
101 previous assembly L_crocea_1.0 (GCF_000972845.1) Unplaced Scaffold NW_017609703.1 (16550..26312)

Chromosome XIII - NC_040023.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC104930291 Neighboring gene proteasome 26S subunit, ATPase 4 Neighboring gene serine/threonine-protein kinase Nek8 Neighboring gene uncharacterized LOC104930286 Neighboring gene lipolysis stimulated lipoprotein receptor

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
beta-1,4-galactosyltransferase 3-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Larimichthys crocea Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference L_crocea_2.0 Primary Assembly

Genomic

  1. NC_040023.1 Reference L_crocea_2.0 Primary Assembly

    Range
    31584686..31602390
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_027286240.1 → XP_027142041.1  beta-1,4-galactosyltransferase 3-like

    UniProtKB/TrEMBL
    A0A6G0ID94
    Conserved Domains (1) summary
    cd00899
    Location:129 → 347
    b4GalT; Beta-4-Galactosyltransferase is involved in the formation of the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids

  2. XM_027286241.1 → XP_027142042.1  beta-1,4-galactosyltransferase 3-like

    UniProtKB/TrEMBL
    A0A6G0ID94
    Conserved Domains (1) summary
    cd00899
    Location:129 → 347
    b4GalT; Beta-4-Galactosyltransferase is involved in the formation of the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids

  3. XM_027286243.1 → XP_027142044.1  beta-1,4-galactosyltransferase 3-like

    UniProtKB/TrEMBL
    A0A6G0ID94
    Conserved Domains (1) summary
    cd00899
    Location:129 → 347
    b4GalT; Beta-4-Galactosyltransferase is involved in the formation of the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids

  4. XM_027286244.1 → XP_027142045.1  beta-1,4-galactosyltransferase 3-like

    UniProtKB/TrEMBL
    A0A6G0ID94
    Related
    ENSLCRP00005025681.1, ENSLCRT00005026151.1
    Conserved Domains (1) summary
    cd00899
    Location:129 → 347
    b4GalT; Beta-4-Galactosyltransferase is involved in the formation of the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids
Nucleotide Protein
Heading Accession and Version

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