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xylt2 xylosyltransferase II [ Larimichthys crocea (large yellow croaker) ]

Gene ID: 104929516, updated on 12-Sep-2024

Summary

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Gene symbol
xylt2
Gene description
xylosyltransferase II
Locus tag
EH28_05147
See related
Ensembl:ENSLCRG00005002677
Gene type
protein coding
RefSeq status
MODEL
Organism
Larimichthys crocea
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Sciaenidae; Larimichthys
Orthologs
human zebrafish all
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Genomic context

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See xylt2 in Genome Data Viewer
Location:
chromosome: XII
Exon count:
11
Annotation release Status Assembly Chr Location
102 current L_crocea_2.0 (GCF_000972845.2) XII NC_040022.1 (1445391..1459052)
101 previous assembly L_crocea_1.0 (GCF_000972845.1) Unplaced Scaffold NW_017608110.1 (253914..265727)

Chromosome XII - NC_040022.1Genomic Context describing neighboring genes Neighboring gene butyrophilin subfamily 3 member A3-like Neighboring gene uncharacterized LOC104929518 Neighboring gene uncharacterized LOC104929515 Neighboring gene Na(+)/H(+) exchange regulatory cofactor NHE-RF1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein xylosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chondroitin sulfate proteoglycan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heparan sulfate proteoglycan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
xylosyltransferase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Larimichthys crocea Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference L_crocea_2.0 Primary Assembly

Genomic

  1. NC_040022.1 Reference L_crocea_2.0 Primary Assembly

    Range
    1445391..1459052
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_027285002.1 → XP_027140803.1  xylosyltransferase 2 isoform X1

    UniProtKB/TrEMBL
    A0A6G0HVI6

  2. XM_027285004.1 → XP_027140805.1  xylosyltransferase 2 isoform X3

    UniProtKB/TrEMBL
    A0A6G0HVI6
    Related
    ENSLCRP00005005646.1, ENSLCRT00005005859.1

  3. XM_027285003.1 → XP_027140804.1  xylosyltransferase 2 isoform X2

    UniProtKB/TrEMBL
    A0A6G0HVI6

  4. XM_027285005.1 → XP_027140806.1  xylosyltransferase 2 isoform X4

    UniProtKB/TrEMBL
    A0A6G0HVI6
    Related
    ENSLCRP00005005657.1, ENSLCRT00005005870.1
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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