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ndst1a N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1a [ Larimichthys crocea (large yellow croaker) ]

Gene ID: 104927060, updated on 12-Mar-2024

Summary

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Gene symbol
ndst1a
Gene description
N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1a
Locus tag
EH28_16741
See related
Ensembl:ENSLCRG00005007452
Gene type
protein coding
RefSeq status
MODEL
Organism
Larimichthys crocea
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Sciaenidae; Larimichthys
Also known as
ndst1
Orthologs
zebrafish all
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Genomic context

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See ndst1a in Genome Data Viewer
Location:
chromosome: I
Exon count:
15
Annotation release Status Assembly Chr Location
102 current L_crocea_2.0 (GCF_000972845.2) I NC_040011.1 (36032220..36075247, complement)
101 previous assembly L_crocea_1.0 (GCF_000972845.1) Unplaced Scaffold NW_017609806.1 (122484..165649)

Chromosome I - NC_040011.1Genomic Context describing neighboring genes Neighboring gene toll-like receptor 2 Neighboring gene CD74 molecule, major histocompatibility complex, class II invariant chain a Neighboring gene myozenin-2 Neighboring gene RNA binding motif protein 22 Neighboring gene soluble guanylate cyclase 88E

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables [heparan sulfate]-glucosamine N-sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables deacetylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 1
Names
N-deacetylase and N-sulfotransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Larimichthys crocea Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference L_crocea_2.0 Primary Assembly

Genomic

  1. NC_040011.1 Reference L_crocea_2.0 Primary Assembly

    Range
    36032220..36075247 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010741054.3 → XP_010739356.1  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 1

    See identical proteins and their annotated locations for XP_010739356.1

    UniProtKB/TrEMBL
    A0A6G0I419
    Related
    ENSLCRP00005019739.1, ENSLCRT00005020139.1
    Conserved Domains (2) summary
    pfam00685
    Location:612 → 862
    Sulfotransfer_1; Sulfotransferase domain
    pfam12062
    Location:28 → 522
    HSNSD; heparan sulfate-N-deacetylase
Nucleotide Protein
Heading Accession and Version

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