U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

plecb plectin b [ Larimichthys crocea (large yellow croaker) ]

Gene ID: 104926500, updated on 12-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
plecb
Gene description
plectin b
Locus tag
EH28_22569
See related
Ensembl:ENSLCRG00005005822
Gene type
protein coding
RefSeq status
MODEL
Organism
Larimichthys crocea
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Sciaenidae; Larimichthys
Orthologs
zebrafish all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See plecb in Genome Data Viewer
Location:
chromosome: XIII
Exon count:
42
Annotation release Status Assembly Chr Location
102 current L_crocea_2.0 (GCF_000972845.2) XIII NC_040023.1 (25053683..25173515, complement)
101 previous assembly L_crocea_1.0 (GCF_000972845.1) Unplaced Scaffold NW_017608982.1 (320527..441838, complement)

Chromosome XIII - NC_040023.1Genomic Context describing neighboring genes Neighboring gene riboflavin transporter 2-like Neighboring gene microtubule actin crosslinking factor 1b Neighboring gene hepcidin-like Neighboring gene hepcidin-like

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ankyrin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cadherin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of muscle IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in hemidesmosome assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intermediate filament cytoskeleton organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in wound healing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in focal adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in hemidesmosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in intermediate filament IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in perinuclear region of cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
plectin

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Larimichthys crocea Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference L_crocea_2.0 Primary Assembly

Genomic

  1. NC_040023.1 Reference L_crocea_2.0 Primary Assembly

    Range
    25053683..25173515 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_027286326.1 → XP_027142127.1  plectin isoform X10

  2. XM_019269167.2 → XP_019124712.2  plectin isoform X13

    Related
    ENSLCRP00005017181.1, ENSLCRT00005017541.1

  3. XM_027286328.1 → XP_027142129.1  plectin isoform X12

  4. XM_019269166.2 → XP_019124711.2  plectin isoform X11

  5. XM_027286325.1 → XP_027142126.1  plectin isoform X10

  6. XM_019269170.2 → XP_019124715.2  plectin isoform X18

    Related
    ENSLCRP00005017212.1, ENSLCRT00005017574.1

  7. XM_027286330.1 → XP_027142131.1  plectin isoform X17

  8. XM_019269164.2 → XP_019124709.2  plectin isoform X7

    Related
    ENSLCRP00005017811.1, ENSLCRT00005018187.1

  9. XM_019269162.2 → XP_019124707.2  plectin isoform X5

  10. XM_019269161.2 → XP_019124706.2  plectin isoform X3

  11. XM_027286322.1 → XP_027142123.1  plectin isoform X6

  12. XM_027286319.1 → XP_027142120.1  plectin isoform X2

  13. XM_027286324.1 → XP_027142125.1  plectin isoform X9

  14. XM_027286321.1 → XP_027142122.1  plectin isoform X4

  15. XM_027286323.1 → XP_027142124.1  plectin isoform X8

  16. XM_027286318.1 → XP_027142119.1  plectin isoform X1

  17. XM_019269172.2 → XP_019124717.2  plectin isoform X21

  18. XM_027286331.1 → XP_027142132.1  plectin isoform X20

  19. XM_019269171.2 → XP_019124716.2  plectin isoform X19

    Related
    ENSLCRP00005017300.1, ENSLCRT00005017663.1

  20. XM_019269169.2 → XP_019124714.2  plectin isoform X16

  21. XM_019269168.2 → XP_019124713.2  plectin isoform X15

  22. XM_027286329.1 → XP_027142130.1  plectin isoform X14

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases