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chst11 carbohydrate (chondroitin 4) sulfotransferase 11 [ Larimichthys crocea (large yellow croaker) ]

Gene ID: 104923738, updated on 12-Mar-2024

Summary

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Gene symbol
chst11
Gene description
carbohydrate (chondroitin 4) sulfotransferase 11
Locus tag
EH28_11035
See related
Ensembl:ENSLCRG00005021879
Gene type
protein coding
RefSeq status
MODEL
Organism
Larimichthys crocea
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Sciaenidae; Larimichthys
Orthologs
human zebrafish all
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Genomic context

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See chst11 in Genome Data Viewer
Location:
chromosome: XX
Exon count:
4
Annotation release Status Assembly Chr Location
102 current L_crocea_2.0 (GCF_000972845.2) XX NC_040030.1 (5920947..6009945, complement)
101 previous assembly L_crocea_1.0 (GCF_000972845.1) Unplaced Scaffold NW_017608125.1 (1283..85733, complement)

Chromosome XX - NC_040030.1Genomic Context describing neighboring genes Neighboring gene NOP protein chaperone 1 Neighboring gene solute carrier family 41 member 2b Neighboring gene thioredoxin reductase 1 Neighboring gene nuclear transcription factor Y, beta a

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteoglycan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
carbohydrate sulfotransferase 11

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Larimichthys crocea Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference L_crocea_2.0 Primary Assembly

Genomic

  1. NC_040030.1 Reference L_crocea_2.0 Primary Assembly

    Range
    5920947..6009945 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010736908.3 → XP_010735210.1  carbohydrate sulfotransferase 11 isoform X2

    UniProtKB/TrEMBL
    A0A0F8CYX8
    Conserved Domains (1) summary
    pfam03567
    Location:108 → 338
    Sulfotransfer_2; Sulfotransferase family

  2. XM_010736907.3 → XP_010735209.1  carbohydrate sulfotransferase 11 isoform X1

    UniProtKB/TrEMBL
    A0A0F8CYX8
    Related
    ENSLCRP00005058999.1, ENSLCRT00005059945.1
    Conserved Domains (1) summary
    pfam03567
    Location:113 → 343
    Sulfotransfer_2; Sulfotransferase family
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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